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Fit ensemble of learners for classification and regression

`fitensemble`

can boost or bag decision
tree learners or discriminant analysis classifiers. The function can
also train random subspace ensembles of KNN or discriminant analysis
classifiers.

For simpler interfaces that fit classification and regression
ensembles, instead use `fitcensemble`

and `fitrensemble`

, respectively. Also, `fitcensemble`

and `fitrensemble`

provide
options for Bayesian optimization.

`Mdl = fitensemble(Tbl,ResponseVarName,Method,NLearn,Learners)`

`Mdl = fitensemble(Tbl,formula,Method,NLearn,Learners)`

`Mdl = fitensemble(Tbl,Y,Method,NLearn,Learners)`

`Mdl = fitensemble(X,Y,Method,NLearn,Learners)`

`Mdl = fitensemble(___,Name,Value)`

returns
a trained ensemble model object that contains the results of fitting
an ensemble of `Mdl`

= fitensemble(`Tbl`

,`ResponseVarName`

,`Method`

,`NLearn`

,`Learners`

)`NLearn`

classification or regression
learners (`Learners`

) to all variables in the table `Tbl`

. `ResponseVarName`

is
the name of the response variable in `Tbl`

. `Method`

is
the ensemble-aggregation method.

trains
an ensemble using additional options specified by one or more `Mdl`

= fitensemble(___,`Name,Value`

)`Name,Value`

pair
arguments and any of the previous syntaxes. For example, you can specify
the class order, to implement 10–fold cross-validation, or
the learning rate.

`NLearn`

can vary from a few dozen to a few thousand. Usually, an ensemble with good predictive power requires from a few hundred to a few thousand weak learners. However, you do not have to train an ensemble for that many cycles at once. You can start by growing a few dozen learners, inspect the ensemble performance and then, if necessary, train more weak learners using`resume`

for classification problems, or`resume`

for regression problems.Ensemble performance depends on the ensemble setting and the setting of the weak learners. That is, if you specify weak learners with default parameters, then the ensemble can perform poorly. Therefore, like ensemble settings, it is good practice to adjust the parameters of the weak learners using templates, and to choose values that minimize generalization error.

If you specify to resample using

`Resample`

, then it is good practice to resample to entire data set. That is, use the default setting of`1`

for`FResample`

.In classification problems (that is,

`Type`

is`'classification'`

):If the ensemble-aggregation method (

`Method`

) is`'bag'`

and:The misclassification cost (

`Cost`

) is highly imbalanced, then, for in-bag samples, the software oversamples unique observations from the class that has a large penalty.The class prior probabilities (

`Prior`

) are highly skewed, the software oversamples unique observations from the class that has a large prior probability.

For smaller sample sizes, these combinations can result in a low relative frequency of out-of-bag observations from the class that has a large penalty or prior probability. Consequently, the estimated out-of-bag error is highly variable and it can be difficult to interpret. To avoid large estimated out-of-bag error variances, particularly for small sample sizes, set a more balanced misclassification cost matrix using

`Cost`

or a less skewed prior probability vector using`Prior`

.Because the order of some input and output arguments correspond to the distinct classes in the training data, it is good practice to specify the class order using the

`ClassNames`

name-value pair argument.To determine the class order quickly, remove all observations from the training data that are unclassified (that is, have a missing label), obtain and display an array of all the distinct classes, and then specify the array for

`ClassNames`

. For example, suppose the response variable (`Y`

) is a cell array of labels. This code specifies the class order in the variable`classNames`

.Ycat = categorical(Y); classNames = categories(Ycat)

`categorical`

assigns`<undefined>`

to unclassified observations and`categories`

excludes`<undefined>`

from its output. Therefore, if you use this code for cell arrays of labels or similar code for categorical arrays, then you do not have to remove observations with missing labels to obtain a list of the distinct classes.To specify that the class order from lowest-represented label to most-represented, then quickly determine the class order (as in the previous bullet), but arrange the classes in the list by frequency before passing the list to

`ClassNames`

. Following from the previous example, this code specifies the class order from lowest- to most-represented in`classNamesLH`

.Ycat = categorical(Y); classNames = categories(Ycat); freq = countcats(Ycat); [~,idx] = sort(freq); classNamesLH = classNames(idx);

For details of ensemble-aggregation algorithms, see Ensemble Algorithms.

If you specify

`Method`

to be a boosting algorithm and`Learners`

to be decision trees, then the software grows*stumps*by default. A decision stump is one root node connected to two terminal, leaf nodes. You can adjust tree depth by specifying the`MaxNumSplits`

,`MinLeafSize`

, and`MinParentSize`

name-value pair arguments using`templateTree`

.`fitensemble`

generates in-bag samples by oversampling classes with large misclassification costs and undersampling classes with small misclassification costs. Consequently, out-of-bag samples have fewer observations from classes with large misclassification costs and more observations from classes with small misclassification costs. If you train a classification ensemble using a small data set and a highly skewed cost matrix, then the number of out-of-bag observations per class can be low. Therefore, the estimated out-of-bag error can have a large variance and can be difficult to interpret. The same phenomenon can occur for classes with large prior probabilities.For the RUSBoost ensemble-aggregation method (

`Method`

), the name-value pair argument`RatioToSmallest`

specifies the sampling proportion for each class with respect to the lowest-represented class. For example, suppose that there are two classes in the training data:and*A*.*B*have 100 observations and*A*have 10 observations. and that the lowest-represented class has*B*observations in the training data.`m`

If you set

`'RatioToSmallest',2`

, then

=*`s`

`m`

`2*10`

=`20`

. Consequently,`fitensemble`

trains every learner using 20 observations from classand 20 observations from class*A*. If you set*B*`'RatioToSmallest',[2 2]`

, then you obtain the same result.If you set

`'RatioToSmallest',[2,1]`

, then

=*`s1`

`m`

`2*10`

=`20`

and

=*`s2`

`m`

`1*10`

=`10`

. Consequently,`fitensemble`

trains every learner using 20 observations from classand 10 observations from class*A*.*B*

For ensembles of decision trees, and for dual-core systems and above,

`fitensemble`

parallelizes training using Intel^{®}Threading Building Blocks (TBB). For details on Intel TBB, see https://software.intel.com/en-us/intel-tbb.

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`ClassificationBaggedEnsemble`

| `ClassificationEnsemble`

| `ClassificationPartitionedEnsemble`

| `RegressionBaggedEnsemble`

| `RegressionEnsemble`

| `RegressionPartitionedEnsemble`

| `templateDiscriminant`

| `templateKNN`

| `templateTree`

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