Vectorize operations referencing adjacent elements of a matrix

1 visualizzazione (ultimi 30 giorni)
I have made the simple code:
for i=2:xsize-1
for j=2:ysize-1
for n=2:zsize-1
matrix(i,j,n)=matrix(i,j,n)+0.2*(matrix(i,j,n)*6-matrix(i-1,j,n)-matrix(i+1,j,n)-matrix(i,j-1,n)-matrix(i,j+1,n)-matrix(i,j,n-1)-matrix(i,j,n+1));
end
end
end
This is part of a diffusion problem and it is particularly slow because the 3D matrix is large. Is it possible to vectorize an operation like this? How do you vectorize references to the matrix like this?

Risposta accettata

Andrei Bobrov
Andrei Bobrov il 18 Feb 2014
Modificato: Andrei Bobrov il 18 Feb 2014
out = convn(matrix,cat(3,[0 0 0;0 -1 0;0 0 0],...
[0 -1 0;-1 1 -1;0 -1 0],...
[0 0 0;0 -1 0;0 0 0]),'valid');
  1 Commento
Christopher
Christopher il 19 Feb 2014
Modificato: Christopher il 19 Feb 2014
Thanks! This gives about a factor of 20 speedup. The form I used is
newmatrix = convn(matrix,cat(3,[0 0 0; 0 rt 0; 0 0 0],...
[0 rt 0; rt 1-rt*6 rt; 0 rt 0],...
[0 0 0; 0 rt 0; 0 0 0]),'same');
where rt=0.2

Accedi per commentare.

Più risposte (0)

Categorie

Scopri di più su Creating and Concatenating Matrices in Help Center e File Exchange

Prodotti

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by