Function aggregateRanks() deals with aggregation of ordered lists or rank matrix. It features robust methods for dealing with noisy input data.
Rank aggregation methods included:
- minimum
- mean
- geometric mean
- median
- Stuart (Stuart et al., Aerts et al.)
- Robust rank aggregation (Kolde et al.)
Acknowledgements:
This is a Matlab implementation of the R package "RobustRankAggreg" written by Raivo Kolde.
References:
Kolde, R., Laur, S., Adler, P., & Vilo, J. (2012).
Robust rank aggregation for gene list integration and meta-analysis. Bioinformatics (Oxford, England), 28(4), 573-580.
Stuart, J. M., Segal, E., Koller, D., & Kim, S. K. (2003).
A gene-coexpression network for global discovery of conserved genetic modules. Science (New York, N.Y.), 302(5643), 249-55.
Aerts, S., Lambrechts, D., Maity, S., Van Loo, P., Coessens, B., De Smet, F., Tranchevent, L.-C., et al. (2006). Gene prioritization through genomic data fusion. Nature biotechnology, 24(5), 537-44.
Cita come
Nejc Ilc (2024). Rank aggregation (https://www.mathworks.com/matlabcentral/fileexchange/41835-rank-aggregation), MATLAB Central File Exchange. Recuperato .
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