scGEAToolbox (single-cell Gene Expression Analysis Toolbox)

Versione 24.4.0 (242 MB) da James Cai
Single-cell Gene Expression Analysis Toolbox
5.0
(2)
1,1K download
Aggiornato 6 apr 2024
Visualizza la licenza su GitHub

scGEAToolbox - a Matlab toolbox for single-cell RNA-seq data analyses

View scGEAToolbox on File Exchange

Quick Installation

Run the following code in MATLAB:

unzip('https://github.com/jamesjcai/scGEAToolbox/archive/main.zip');
addpath('./scGEAToolbox-main');

Getting Started Quickly Using the SCGEATOOL App

Run the following code in MATLAB to start:

scgeatool

Open in MATLAB Online

Read Documentation

scGEAToolbox Documentation

SEE ALSO - Standalone Application SCGEATOOL :: Single-Cell Gene Expression Analysis Tool

SCGEATOOL is a standalone application running on Windows machines that do not have MATLAB installed. SCGEATOOL is a lightweight and blazing fast desktop application that provides interactive visualization functionality to analyze single-cell transcriptomic data. SCGEATOOL allows you to easily interrogate different views of your scRNA-seq data to quickly gain insights into the underlying biology. SCGEATOOL is a pre-compiled standalone application developed in MATLAB. Pre-compiled standalone releases are meant for those environments without access to MATLAB licenses. Standalone releases provide access to all of the functionality of the SCGEATOOL standard MATLAB release encapsulated in a single application. SCGEATOOL is open-sourced to allow you to experience the added flexibility and speed of the MATLAB environment when needed.

Help

If you have any questions or require assistance using scGEAToolbox, please contact me.

Citation

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019;btz830. doi:10.1093/bioinformatics/btz830

Cita come

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019 Nov 7:btz830. doi: 10.1093/bioinformatics/btz830. PMID: 31697351.

Compatibilità della release di MATLAB
Creato con R2023b
Compatibile con qualsiasi release
Compatibilità della piattaforma
Windows macOS Linux
Categorie
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Le versioni che utilizzano il ramo predefinito di GitHub non possono essere scaricate

Versione Pubblicato Note della release
24.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.0
24.3.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.9
24.3.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.8
24.3.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.7
24.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.6
24.3.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.5
24.3.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.4
24.3.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.3
24.3.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.2
24.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.1
24.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.0
24.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.2.0
24.1.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.3
24.1.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.1
24.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.0
23.9.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.9.0
23.8.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.8.0
23.7.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.7.0
23.6.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.6.5
23.6.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.6.0
23.5.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.5.0
23.4.7.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.7
23.4.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.6
23.4.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
23.4.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.4
23.4.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.2
23.4.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.1
23.3.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.2
23.3.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.1
23.3.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.0
23.2.6.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.6
23.2.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.4
23.2.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.3
23.2.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.1
23.1.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.4
23.1.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.3
23.1.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.2
23.1.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.1
22.9.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.9.1
22.7.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.7.1
22.6.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.6.1
22.4.11

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.11
22.4.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.1
22.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.3.6
22.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.3.1
22.2.21

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.2.21
22.2.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.2.9
22.1.31

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.31
22.1.30

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.30
22.1.29

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.29
22.1.23

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.23
22.1.19

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.19
22.1.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.13
21.12.28

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.28
21.12.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.13
21.12.10

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.10
21.12.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.8
21.12.04

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.04
21.11.19

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.19
21.11.18

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.18
21.11.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.13
21.11.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.6
21.10.17

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.10.17
21.9.30

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.30
21.9.23

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.23
21.9.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.7
21.9.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.3
21.9.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.2
21.8.29

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.29
21.8.24

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.24
21.8.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.9
21.8.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.4
21.8.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.1
21.7.29.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.7.29
21.7.26

new doc
21.7.14

new title
21.7.13

indicates the folder to be added when installing add-on
21.1.16

sc_scatter
21.1.15

SC_SCATTER(X, genelist)
21.1.14

Try new function: SC_SCATTER.m
Read documentation URL: https://scgeatoolbox.readthedocs.io/
20.8.2

add sc_celltypeexplorer_auto
20.7.5

cell marker gene identification function added.

1.0.0

Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.
Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.