718 results

sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB.

Brainstorm

Version 3.4.0.0

by Martin Cousineau

Brainstorm: Open source application for MEG/EEG data analysis

EEGLAB

Version 2024.0

by Arnaud Delorme

A toolbox for processing electrophysiological data

FieldTrip

Version 1.0.1.0

by Robert Oostenveld

The MATLAB software toolbox for MEG and EEG analysis

The most advanced toolbox for neuroscience stimulus presentation, response collection and data collection.

Psychophysics Toolbox Version 3 (or short "PTB") extends MATLAB with functions for research grade neuroscience stimulus presentation and response collection. The PTB core routines provide trustworthy

CanlabCore

Version 1.0.0

by Tor Wager

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis

electroCUDA

Version 0.0.200

by Kevin Tan

Robust pelectrophysiology tools with GPU acceleration

Let's build brains together!

A neurorobot is a robot controlled by a computer simulation of a biological brain. At Backyard Brains we use neurorobots to teach neuroscience in schools. To learn more, see this demo video and our

EXTRACT-public

Version 1.0.0

by Fatih Dinc

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series

This is a pipeline that produces CNN-based segmentations of the striatal regions of the brain based on a structural T1w image.

Nizambad, Yash Patel and Jared X. Van Snellenberg, at the Cognitive Neuroscience and Psychosis Lab at Stony Brook University School of Medicine.The striatal regions of interest (ROIs) segmented are the

MATLAB code for reading and writing CIFTI connectivity files

imtool3D_td

Version 1.0.4

by Tanguy

3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )

FeeLab/seqNMF

Version 1.0.0.0

by SeqNMF FeeLab

An algorithm for unsupervised discovery of sequential structure

Generate optic flow video files

A MATLAB toolbox to create metadata instances using the openMINDS metadata models

openMINDS Metadata Models for MATLAB MATLAB package for the openMINDS metadata framework for linked data in neuroscience. The package contains all the latest openMINDS schemas as

MediationToolbox

Version 1.0.0

by Tor Wager

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing.

Rigbox

Version 2.1.1

by Jai Bhagat

A MATLAB toolbox for running neurophysiological experiments and managing data

Rigbox is a high-performance, open-source software toolkit developed in an object-oriented programming paradigm to facilitate a modular approach to designing behavioral neuroscience experiments

Tools for hyperpolarized MRI acquisition and reconstruction methods

kristinbranson/JAABA

Version 1.0.6.0

by Kristin

JAABA: The Janelia Automatic Animal Behavior Annotator

CellReg

Version 1.0.0

by liron sheintuch

Cell registration across multiple sessions in large-scale calcium imaging data

Spike Extraction Tool

MEAnalyzer

Version 2023.01.16

by Raha Dastgheyb

Anakyze spike trains exported from multi-electrode arrays

Brainstorm Custom Processes Repository for EEG Analysis

A MATLAB toolbox for interacting with the Allen Brain Observatory

GIFT

Version 4.0.5.0

by Cyrus Eierud

Group ICA/IVA software (MATLAB)

spikesort

Version 1.0.0

by Matt Smith

Matlab-based spike sorter for NEV files

Kilosort

Version 1.0.0.0

by Marius Pachitariu

Fast and accurate spike sorting toolbox

MATLAB toolbox for spike-train community detection

A Matlab interface for reading and writing NWB files.

Recognize 3D structures in volumetric images

ObjectFinder is a MATLAB app that allows you to recognize a large number of small structures within a three-dimensional image volume. This app is developed for neuroscience research, with the purpose

A MATLAB Package for Relating Neural Signals to Continuous Stimuli

Quickly create publication-quality plots: automatic colors & subplots, stats, violin/box plots, etc.

Toolbox for designing spectral-spatial RF pulses for MRI and MR spectroscopy applications

Long-T2 suppression RF pulses for MRI of semi-solid tissues

PERMUTOOLS

Version 1.0

by Mick Crosse

A MATLAB package for multivariate permutation testing and effect size measurement

normal. Behav Res, 49:294–309.Hentschke H, Stuttgen MC (2011) Computation of measures of effect size for neuroscience data sets. Eur J Neurosci, 34:1887–1894.Cohen J (1969) Statistical power for the

A collection of apps and modules for processing, analysis and visualization of two-photon imaging data.

Detection and removal of an artifactual shared signal between simultaneously acquired slices in unprocessed multiband fMRI.

Multiband Censoring Optimization Tool (MCOT) for Resting-State Functional Connectivity Analyses

: 35033673; PMCID: PMC9057309.Cognitive Neuroscience and Psychosis (CNaP) Lab / Multi-Modal Translational Imaging (MMTI) LabDepartment of Psychiatry and Behavioral Health, Renaissance School of Medicine at

This repository is a demo of a deep-learning EEG model in MATLAB. This corresponds to a published paper in the description.

Neuroscience (SCCN). Data preprocessing included the mean baseline removal, down-sampling to 128 Hz, band-pass filtering (0.25-25 Hz), and re-referencing to the averaged mastoids. The example demonstrates the

A MATLAB implementation of the DeepInterpolation principle.

applications to systems neuroscience data.Getting startedGet oriented and get started using MATLAB Online. This will orient you to several live script examples available to guide new users.You can also try one

siibralab

Version 0.1.1.0

by Timo Dickscheid

Matlab interface to the siibra toolsuite

incorporation of brain region features from different sources into reproducible neuroscience workflows. siibraLab is a Matlab® toolbox for accessing functions provided in siibra.siibra provides structured

qMRLab

Version 2.4.1

by Agah Karakuzu

Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: Use GUI or CLI to fit and simulate a myriad of qMRI models.

Award, ISMRM 2018Sponsored byInstitut TransMedTech Montréal (ITMT)Canadian Open Neuroscience Platform (CONP)International Society of Magnetic Resonance in Medicine (ISMRM)CitationIf you use qMRLab in you

Interface for using finite elements in inverse problems with complex domains

bombcell

Version 1.4.0.0

by Julie Fabre

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels da

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience.

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel

bids-matlab

Version 0.2.0.0

by Remi Gau

MATLAB / Octave tools for BIDS datasets

Free and open source software for the analysis of brain imaging data sequences

The Rodent Sleep Spindle Detector app can identify sleep spindles within intracranial EEG (iEEG) recordings.

MBL NS&B Leech Module

Repository for experiments with BackyardBrains Hardware

zapit

Version 1.0.1.0

by Rob Campbell

General purpose optostimulation system

This video-based course introduces learners to the power of MATLAB in different areas of neuroscience. Each module covers a different topic.

Essentials of Neuroscience with MATLABThe Essentials of Neuroscience With MATLAB course was developed to provide advanced undergraduates and early graduate students with a basic familiarity with

DeepSqueak

Version 3.0.1

by Kevin R Coffey

DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research

A deep learning-enabled cell fluorescence measurement tool

Molecular Neuroscience and Dementia, University of Sydney.

Rodent-Tracker

Version 1.2.0.0

by Kevin Holly

Interface for connecting NEURON and MATLAB

PatchWarp

Version 1.3.3.0

by Ryoma Hattori

Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.

Simulink library aimed at advancing the study of neuromorphic robot locomotion.

during the summer of 2023.Additionally, within this directory you will find the 'Neuron Guidance' subfolder, which aims to extend your understanding of the fundamental neuroscience principles underpinning

ExploreASL

Version 1.11.0.0

by Henk

ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.mutsaer

Repository for showing how to use snirf datafiles in Matlab using Homer3.

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