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Arthur Goldsipe


Last seen: 4 giorni ago

MathWorks

293 total contributions since 2011

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Answered
using a nested for loop to edit a structure
As mentioned in the comments, if you want to compare one atom at a time, the proper way to index is Atom(i3).AtomSerNo. But if y...

5 giorni ago | 0

Answered
FRET data analysis with simulation
Hi Parul, This sounds like a fitting problem that can be solved using sbiofit from the command line or using a fit program with...

11 giorni ago | 0

Answered
In Simbiology, Is there a way to set a slider with an integer scaling?
It is not currently possible to constrain the value of a slider to an integer. It's a great suggestion for a future enhancement,...

16 giorni ago | 0

Answered
What is the difference between BoundaryCondition and ConstantAmount?
Constant=true means that the value of a species cannot change during the course of a simulation. It can only be modified at time...

16 giorni ago | 0

| accepted

Answered
implement quasi zeroth order kinetic in Simbio
Hi, Whenever you have a discontinuous step change like this in your model, you should include either doses or events at the dis...

17 giorni ago | 0

Answered
Any simulation speed differences between models loaded with SimBiology() vs sbioloadproject?
I don't expect you to see any noticeable performance impact when simulating a model from the command line, while the same model ...

18 giorni ago | 0

| accepted

Answered
simbiology problem PK PD modeling
Hi, The problem is that the two variables "time" and "drug" in your data were imported as text instead of numbers. I'm not sure...

26 giorni ago | 0

Answered
How can I find 4 constants values from and indirect fitting value?
I see that the SimBiology product is tagged for this post, but the attached files are not using SimBiology. I'm one of the devel...

circa un mese ago | 0

Answered
Why does my .sbproj file can't open on other's computer?
This is expected. Please see the following discussion: https://www.mathworks.com/matlabcentral/answers/500762-loading-simbiolog...

circa un mese ago | 0

| accepted

Answered
How to correctly compile a function containing variables with dimension and call it in SimBiology
Hi, The issue you are seeing is addressed in the "Tip" on the documentation for UnitConversion. The problem is that you are ha...

circa 2 mesi ago | 1

Answered
Issues with doses/variants in parfor loop in SimBiology
First, what version of SimBiology are you using? Prior to R2019b, there was a problem that prevented objects from getting sent t...

3 mesi ago | 0

Answered
It is possible to add a constant input term (without reaction rate) for a specie in the diagram view in SIMBIOLOGY?
If I understand your question correctly, it sounds like you want to use a rate rule. If you want to build a rate rule in the dia...

3 mesi ago | 0

| accepted

Answered
error saying "dimentional analysis failed for reaction."
Yes, nanomole is a unit with dimensions of amount, and nanomolar is a unit with dimensions of concentration. Can you share your...

3 mesi ago | 0

Answered
SUNDIALS installation in MATLAB
What exactly did you download? Can you provide the website or download link? I'm not sure how we can help you without knowing mo...

4 mesi ago | 0

Answered
What is smooth curve?
I'm not sure I fully understand your question. If you're asking what the checkbox labeled "Show smooth curve" does, you can see...

5 mesi ago | 0

Answered
Namespace and other html / xml information in SimBiology Notes
I would recommend either plain text or XHTML 1.0 as your format. sbmlexport will export both of these to SBML as XHTML 1.0, whic...

5 mesi ago | 1

| accepted

Answered
Loading simbiology models created in MATLAB 2019b in previous version of MATLAB
In general, we cannot guarantee this kind of compatibility (which is called "forward compatibility"). In practice, SimBiology mo...

5 mesi ago | 0

| accepted

Answered
How to implement multiple error model?
It depends on whether you are doing nonlinear regression or nonlinear mixed-effects modeling. If you are doing nonlinear regress...

5 mesi ago | 0

| accepted

Answered
seqpdist Kimura "method not available for amino acids" even though working with nucleotides
As Geoff points out in the comments, the problem is that several of the default option values don't work for the Kimura distance...

5 mesi ago | 0

| accepted

Solved


Aquiles y la tortuga
Contaba Zenón en su famosa paradoja que un día Aquiles, el guerrero griego más veloz de la Hélade, se enfrentó a una pequeña tor...

5 mesi ago

Answered
Microarray Analysis Trouble in Analysis
Let me make sure I understand your problem. You are trying to run the following example: https://uk.mathworks.com/help/bioinfo/...

5 mesi ago | 0

Answered
Simbiology Stochastic solvers non mass action (nonlinear) propensities
Hi, You correctly understand the current constraints of SimBiology's stochastic solver: reactions must use linear, mass action ...

5 mesi ago | 1

| accepted

Answered
Restricting output times when calling simfunctions
Yes, if you use tStop = [], then only results at tOutput will be reported.

6 mesi ago | 0

| accepted

Answered
Diagnosing simfunction acceleration failure
Hi Abed, There is currently no publicly documented way to get additional debugging information. These situations have historica...

6 mesi ago | 0

| accepted

Answered
Stopping simulation early on event
Hi Abed, Interesting question. The only way an event can stop a simulation early is if the event errors. sbiofit would handle s...

6 mesi ago | 0

| accepted

Answered
Constant parameter setting throws error, or... if I don't set a parameter to constant, but don't change it, does it stay constant?
Great feedback as always, Jim. As for your immediate questions: "If I leave the parameter variable all the time, but nothing i...

7 mesi ago | 0

| accepted

Answered
deleting or removing variant using variant array handle gives unexpected results.
I know it's confusing, and I'll try to explain what's going on. But let me start by saying that the behavior you're seeing is wh...

8 mesi ago | 1

| accepted

Answered
Error model with curve-fitting
SimBiology's error models are only available when fitting data to SimBiology models using functions like sbiofit. If you are dir...

8 mesi ago | 0

| accepted

Answered
Mass balance issues with PBPK model in Simbiology
One way to confirm that that your model structure is correct is to use SimBiology sbioconsmoiety function to identify conserved ...

8 mesi ago | 0

| accepted

Answered
Add multiple doses in ODEsolver
Because doses introduce discontinuities in the solution, you basically need to stop the ODE simulation every time a dose is appl...

9 mesi ago | 0

| accepted

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