bioinfo.pipeline.library.loadLibrary
Description
loads the library from the specified MAT-file and returns as a lib
= bioinfo.pipeline.library.loadLibrary(libFileName
)bioinfo.pipeline.library.Library
object lib
.
Examples
Create and Save Bioinformatics Pipeline Blocks in Block Libraries
Import the pipeline, block, and library objects needed for the example.
import bioinfo.pipeline.library.* import bioinfo.pipeline.block.* import bioinfo.pipeline.Pipeline
Create a pipeline.
P = Pipeline;
Create a FileChooser
block for a FASTQ file, that is provided with the toolbox, and add to the pipeline.
fastqfile = FileChooser(which("SRR005164_1_50.fastq"));
addBlock(P,fastqfile);
Create a block library directly from the pipeline.
mylib = Library(P,Name="mylib")
mylib = Library with properties: Name: "mylib" Description: "" BlockNames: "FileChooser_1" Blocks: [1x1 bioinfo.pipeline.block.FileChooser]
Add a block to the library.
sequencefilter = SeqFilter(Method="MinLength"); addBlock(mylib,sequencefilter,"MinLengthSeqFilter");
Remove a block from the library.
removeBlock(mylib,"MinLengthSeqFilter");
Add a library to the list of available libraries.
addLibrary(mylib);
You can also save a library as a MAT-file and share with others. saveLibrary
creates the corresponding MAT-file in the current folder. The MAT-file has the same base name as the library being saved. You may set Overwrite=true
to overwrite any existing library with the same name. For instance, the following call creates mylib.mat
in the current folder.
saveLibrary(mylib,Overwrite=true);
Instead of saving the file in the current directory, you can also specify an alternative location to save the file.
saveLibrary(mylib,"C:\Examples\BlockLibraries\");
Load the library from the MAT-file.
mylib2 = loadLibrary("mylib.mat");
Create a new SeqFilter
block that filters sequences using their average base qualities instead. Add the block to mylib2 and rename the library.
mqseqfilter = SeqFilter(Method="MeanQuality"); addBlock(mylib,mqseqfilter,"MeanQuality"); mylib2.Name = "mylib2"
mylib2 = Library with properties: Name: "mylib2" Description: "" BlockNames: "FileChooser_1" Blocks: [1x1 bioinfo.pipeline.block.FileChooser]
Add mylib2 to the list of available libraries.
addLibrary(mylib2,Overwrite=true);
Get a list of all the available libraries.
availableLibs = getLibrary
availableLibs=1×2 Library array with properties:
Name
Description
BlockNames
Blocks
Remove the library mylib
from the list.
removeLibrary("mylib");
availableLibs = getLibrary
availableLibs = Library with properties: Name: "mylib2" Description: "" BlockNames: "FileChooser_1" Blocks: [1x1 bioinfo.pipeline.block.FileChooser]
Input Arguments
libFileName
— Name of MAT-file
character vector | string scalar
Name of a MAT-file that contains a library, specified as a character vector or string scalar.
Tip
Use bioinfo.pipeline.library.saveLibrary
to save a library to a
MAT-file.
Data Types: char
| string
Version History
Introduced in R2023b
Comando MATLAB
Hai fatto clic su un collegamento che corrisponde a questo comando MATLAB:
Esegui il comando inserendolo nella finestra di comando MATLAB. I browser web non supportano i comandi MATLAB.
Select a Web Site
Choose a web site to get translated content where available and see local events and offers. Based on your location, we recommend that you select: .
You can also select a web site from the following list:
How to Get Best Site Performance
Select the China site (in Chinese or English) for best site performance. Other MathWorks country sites are not optimized for visits from your location.
Americas
- América Latina (Español)
- Canada (English)
- United States (English)
Europe
- Belgium (English)
- Denmark (English)
- Deutschland (Deutsch)
- España (Español)
- Finland (English)
- France (Français)
- Ireland (English)
- Italia (Italiano)
- Luxembourg (English)
- Netherlands (English)
- Norway (English)
- Österreich (Deutsch)
- Portugal (English)
- Sweden (English)
- Switzerland
- United Kingdom (English)