Instead of clicking 'publish', I want to write a code for it which makes use of saved settings. How?

I've edited 'publishing settings' for a certain code to output a PDF file and to not include code, I've saved these settings under the name 'clinical report', and now I'd like to enter a CODE into my report that executes this, instead of manually clicking 'publish'. Does anybody have any idea?
Thanks in advance

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Is this the sequence in which the code should be written? When I run this I get a recursive run but nothing published.
options_doc_nocode.format = 'pdf'; options_doc_nocode.showCode = false; publish('clinicalreport.m',options_doc_nocode);
Yes!
I replaced your m-file, clinicalreport.m, by fourier_demo2.m. It produces a pdf-file without m-code
copyfile(fullfile(matlabroot,'help','techdoc',...
'matlab_env','examples','fourier_demo2.m'),'.','f')
function_name = 'fourier_demo2.m';
options_doc_nocode.format = 'pdf';
options_doc_nocode.showCode = false;
publish( function_name, options_doc_nocode );
I assume the problem is in clinicalreport.m.

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