General Viterbi Algorithm

This function runs Viterbi algorithm given valid parameters and returns optimal path into a file (ou

General implementation of matlab version of Viterbi algorithm specifically written for gene structure finding problem in mind. However, it can be modified to suit the goal of a user.

Input:
Transition Probability Matrix
Emission Probability Matrix
Initial Probability Matrix
States Matrix (ie. Exon,Intron, Intergenic, etc.)
Sequence File Name <-- Optional
Output:
Most probable state sequence ('Path') into output.txt

Further Detail: http://en.wikipedia.org/wiki/Viterbi_algorithm