pan_fit

Versione 1.1.1 (162 KB) da Cengiz Gunay
Provides Pandora Toolbox module pan_fit for fitting parameters of Hodgkin-Huxley type ion channel and neuron model parameters
0.0
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11 download
Aggiornato 31 gen 2023
Visualizza la licenza su GitHub

pan_fit - Pandora Matlab toolbox module for fitting neuronal models

pan_fit is an object-oriented Matlab toolbox for fitting parameters of Hodgkin-Huxley type ion channel and neuron model parameters. It achieves this by simulating model ODEs and calculating differences to an observed waveform output. It can simulate any ODE or simple functions as well.

View pan_fit on File Exchange

Prerequisites

  • Pandora Toolbox - Get from Github or Mathworks FileExchange
  • Matlab Optimization Toolbox is used by default, but other methods can be substituted

Installation:

Use the addpath Matlab command to add the pan_fit/ subdirectory to the Matlab search path. For example:

>> addpath my/download/dir/pandora-fit-matlab-x.y.z/pan_fit

To avoid doing this every time you start Matlab in Windows, use the 'File->Set path' menu option and add the pandora/ directory to the search path. Or, create a startup.m file in the '$HOME/matlab' directory in In UNIX/Linux and 'My Documents/MATLAB' directory in Windows with the above addpath command inside.

Documentation:

See the embedded documentation that comes with each file using the Matlab help browser.

Copyright:

Copyright (c) 2010-23 Cengiz Gunay cengique@users.sf.net. This work is licensed under the Academic Free License ("AFL") v. 3.0. To view a copy of this license, please look at the COPYING file distributed with this software or visit http://opensource.org/licenses/afl-3.0.txt.

Cita come

Cengiz Gunay (2024). pan_fit (https://github.com/cengique/pandora-fit-matlab/releases/tag/1.1.1), GitHub. Recuperato .

Compatibilità della release di MATLAB
Creato con R2022a
Compatibile con qualsiasi release
Compatibilità della piattaforma
Windows macOS Linux

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@param_HH_chan_int_v

@param_act

@param_act_t

@param_func

@param_func/private

@param_func_compiled

@param_mult

@param_spline_func

@param_tau_v

@solver_int

old

unittest

Le versioni che utilizzano il ramo predefinito di GitHub non possono essere scaricate

Versione Pubblicato Note della release
1.1.1

See release notes for this release on GitHub: https://github.com/cengique/pandora-fit-matlab/releases/tag/1.1.1
1.1

Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.
Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.