NANSEN

A collection of apps and modules for processing, analysis and visualization of two-photon imaging data.
1 download
Aggiornato 28 ott 2025

Cita come

Eivind Hennestad (2025). NANSEN (https://github.com/VervaekeLab/NANSEN/releases/tag/v0.11.0), GitHub. Recuperato .

Compatibilità della release di MATLAB
Creato con R2023b
Compatibile con R2020b fino a R2024b
Compatibilità della piattaforma
Windows macOS Linux
Tag Aggiungi tag

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

+nansen

+nansen/+app

+nansen/+app/+setup

+nansen/+app/+tutorial

+nansen/+common

+nansen/+common/+abstract/@Specification

+nansen/+common/+assertion

+nansen/+common/+constant

+nansen/+common/+exception

+nansen/+common/+uiinform/+roimanager

+nansen/+config

+nansen/+config/+abstract

+nansen/+config/+addons

+nansen/+config/+addons/@AddonManager

+nansen/+config/+addons/@AddonManagerApp

+nansen/+config/+addons/@AddonManagerUI

+nansen/+config/+dloc

+nansen/+config/+dloc/+enum

+nansen/+config/+dloc/@DataLocationModel

+nansen/+config/+dloc/@DataLocationModelApp

+nansen/+config/+dloc/@DataLocationModelUI

+nansen/+config/+dloc/@FolderOrganizationUI

+nansen/+config/+dloc/@FolderPathViewer

+nansen/+config/+dloc/@LocalRootPathManager

+nansen/+config/+dloc/@MetadataInitializationUI

+nansen/+config/+mixin

+nansen/+config/+module

+nansen/+config/+module/@ModuleManager

+nansen/+config/+module/@ModuleManagerApp

+nansen/+config/+module/@ModuleManagerUI

+nansen/+config/+project

+nansen/+config/+project/+event

+nansen/+config/+project/@Preferences

+nansen/+config/+project/@Project

+nansen/+config/+project/@ProjectManager

+nansen/+config/+project/@ProjectManagerApp

+nansen/+config/+project/@ProjectManagerUI

+nansen/+config/+varmodel

+nansen/+config/+varmodel/+event

+nansen/+config/+varmodel/+template/+twophoton

+nansen/+dataio

+nansen/+dataio/+dataconvert/+roi

+nansen/+dataio/+dataconverter/+roi

+nansen/+dataio/+dataconverter/+roi/+adapter/@Caiman

+nansen/+dataio/+dataconverter/+roi/+adapter/@Extract

+nansen/+dataio/+dataconverter/+roi/+adapter/@Nansen

+nansen/+dataio/+dataconverter/+roi/+adapter/@Suite2p

+nansen/+dataio/+dataset

+nansen/+dataio/+dialog

+nansen/+dataio/+fileadapter

+nansen/+dataio/+fileadapter/+imagestack

+nansen/+dataio/+fileadapter/+internal

+nansen/+dataio/+fileadapter/+roi

+nansen/+dataio/+fileadapter/+timeseries

+nansen/+dataio/+metadata

+nansen/+dataio/+session

+nansen/+dataio/+session/deprecated

+nansen/+dataio/@DataIoModel

+nansen/+dataio/@DataSet

+nansen/+datatype/+roi

+nansen/+enum

+nansen/+interactive

+nansen/+internal

+nansen/+internal/+dataio/+fileadapter

+nansen/+internal/+plugin

+nansen/+internal/+plugin/+enum

+nansen/+internal/+project/+create

+nansen/+internal/+refactor

+nansen/+internal/+setup

+nansen/+internal/+setup/+java

+nansen/+internal/+system

+nansen/+internal/+templating

+nansen/+internal/+user

+nansen/+internal/+user/@NansenUserSession

+nansen/+internal/+utility

+nansen/+manage

+nansen/+manage/+options

+nansen/+metadata

+nansen/+metadata/+abstract

+nansen/+metadata/+abstract/@MetadataEntity

+nansen/+metadata/+abstract/@TableVariable

+nansen/+metadata/+event

+nansen/+metadata/+mixin

+nansen/+metadata/+tablevar

+nansen/+metadata/+tablevar/+mixin

+nansen/+metadata/+temp

+nansen/+metadata/+type

+nansen/+metadata/+type/+animal

+nansen/+metadata/+utility

+nansen/+metadata/@MetaTable

+nansen/+metadata/@MetaTableCatalog

+nansen/+mixin

+nansen/+module

+nansen/+module/resources/module_folder_template/+nansen/+module/+category/+name

+nansen/+notes

+nansen/+pipeline

+nansen/+pipeline/@PipelineAssignmentModelApp

+nansen/+pipeline/@PipelineAssignmentModelUI

+nansen/+plugin

+nansen/+plugin/+fileadapter

+nansen/+plugin/+fileadapter/+internal

+nansen/+processing

+nansen/+processing/+image

+nansen/+processing/+mixin

+nansen/+processing/+roi

+nansen/+processing/+roi/+fissa

+nansen/+processing/+util

+nansen/+processing/@MotionCorrection

+nansen/+processing/@MotionCorrectionPreview

+nansen/+processing/@RoiSegmentation

+nansen/+processing/@SignalExtractor

+nansen/+session

+nansen/+session/+methods

+nansen/+session/+methods/+template

+nansen/+tools/+image/+registration

+nansen/+tools/+image/+resize

+nansen/+tools/+image/+transform

+nansen/+twophoton/+autosegmentation

+nansen/+twophoton/+autosegmentation/+able

+nansen/+twophoton/+autosegmentation/+cnmf

+nansen/+twophoton/+autosegmentation/+extract

+nansen/+twophoton/+autosegmentation/+extract/@Options

+nansen/+twophoton/+autosegmentation/+suite2p

+nansen/+twophoton/+autosegmentation/+suite2p/@Options

+nansen/+twophoton/+autosegmentation/+template

+nansen/+twophoton/+roi

+nansen/+twophoton/+roi/+compute

+nansen/+twophoton/+roi/+stats

+nansen/+twophoton/+roimasks

+nansen/+twophoton/+roisignals

+nansen/+twophoton/+roisignals/+analyze

+nansen/+twophoton/+roisignals/+extract

+nansen/+twophoton/+roisignals/+process/+deconvolve

+nansen/+twophoton/+roisignals/+process/+dff

+nansen/+ui

+nansen/+ui/+control

+nansen/+ui/+data

+nansen/+ui/+dialog

+nansen/+ui/+fileviewer

+nansen/+ui/+mixin

+nansen/+ui/+widget

+nansen/+util

+nansen/+util/+path

+nansen/+util/+text

algorithms

algorithms/+flufinder

algorithms/+flufinder/+binarize

algorithms/+flufinder/+convert

algorithms/+flufinder/+detect

algorithms/+flufinder/+filter

algorithms/+flufinder/+longitudinal

algorithms/+flufinder/+module

algorithms/+flufinder/+preprocess

algorithms/+flufinder/+signals

algorithms/+flufinder/+utility

algorithms/+ophys/+twophoton

algorithms/+ophys/+twophoton/+analysis

algorithms/+ophys/+twophoton/+data

algorithms/+ophys/+twophoton/+plotting

algorithms/+stack

algorithms/+stack/+downsample

algorithms/+stack/+process/+compute

algorithms/+stack/+process/+filter2

algorithms/+stack/+process/+filter3

algorithms/+stack/+process/+framebin

algorithms/+stack/+reshape

algorithms/+stack/+transform

algorithms/+stack/+zproject

api/+nansen

apps

apps/+fovmanager

apps/+fovmanager/+fileio

apps/+fovmanager/+mapobject

apps/+fovmanager/+utility

apps/+fovmanager/+utility/+atlas

apps/+fovmanager/+view

apps/+fovmanager/+widget

apps/+fovmanager/@App

apps/+imviewer/+export

apps/+imviewer/+plot

apps/+imviewer/+plugin/@FlowRegistration

apps/+imviewer/+plugin/@NoRMCorre

apps/+imviewer/+plugin/@RoiClassifier

apps/+imviewer/+plugin/@RoiManager

apps/+imviewer/+plugin/@RoiSignalVideo

apps/+imviewer/+tool

apps/+imviewer/+utility

apps/+imviewer/+widget

apps/+imviewer/@App

apps/+imviewer/@ImviewerPlugin

apps/+mclassifier

apps/+nansen

apps/+nansen/+enum

apps/+nansen/@App

apps/+nansen/@FileViewer

apps/+nansen/@MessageDisplay

apps/+nansen/@MetaTableViewer

apps/+nansen/@Preferences

apps/+nansen/@TaskProcessor

apps/+nansen/internal

apps/+roiclassifier

apps/+roiclassifier/@App

apps/+roisignalviewer/@App

apps/+signalviewer

apps/+signalviewer/+event

apps/+signalviewer/+plot

apps/+signalviewer/+pointerTool

apps/+signalviewer/+utility

apps/+signalviewer/@App

apps/+structeditor

apps/+structeditor/+eventdata

dashboards

dashboards/+roimanager

datatypes

datatypes/+nansen/+roisignals

datatypes/+nansen/+stack

datatypes/+nansen/+stack/+data

datatypes/+nansen/+stack/+data/+abstract

datatypes/+nansen/+stack/+metadata

datatypes/+nansen/+stack/+processor

datatypes/+nansen/+stack/+utility

datatypes/+nansen/+stack/+virtual

datatypes/+nansen/+stack/@Deinterleaver

datatypes/+nansen/+stack/@HighResolutionImage

datatypes/+nansen/+stack/@ImageStack

examples

external

external/fileexchange

external/fileexchange/+nansen/+external/+fex/+datautil

external/fileexchange/+nansen/+external/+fex/+sysutil

external/fileexchange/colormaps

external/fileexchange/colormaps/cbrewer/cbrewer

external/fileexchange/colormaps/matplotlib/colormaps

external/fileexchange/other

external/fileexchange/other/GetGoogleSpreadsheet

general

general/+tools

general/+utility

general/+utility/+cell

general/+utility/+class

general/+utility/+data

general/+utility/+data/+mixin

general/+utility/+dir

general/+utility/+io

general/+utility/+path

general/+utility/+string

general/+utility/+struct

general/+utility/+system

graphics

graphics/+applify

graphics/+applify/+menu

graphics/+applify/+mixin

graphics/+applify/+utility

graphics/+applify/+utility/+abstract

graphics/+applify/@uicontrolSchemer

graphics/+nansen/+theme

graphics/+uics

graphics/+uim

graphics/+uim/+abstract

graphics/+uim/+control

graphics/+uim/+decorator

graphics/+uim/+dialog

graphics/+uim/+event

graphics/+uim/+graphics

graphics/+uim/+illustration

graphics/+uim/+interface

graphics/+uim/+interface/+pointerTool

graphics/+uim/+interface/+pointerTool/+mixin

graphics/+uim/+mixin

graphics/+uim/+shape

graphics/+uim/+style

graphics/+uim/+utility

graphics/+uim/+utility/+layout

graphics/+uim/+widget

graphics/+uiw/+abstract

graphics/+uiw/+utility

graphics/+uiw/+widget

modules

modules/+nansen/+module/+general/+core/+fileadapter

modules/+nansen/+module/+general/+core/+fileadapter/+ExcelFile

modules/+nansen/+module/+general/+core/+fileadapter/+MatFile

modules/+nansen/+module/+general/+core/+sessionmethod/+data

modules/+nansen/+module/+general/+core/+sessionmethod/+data/+organize

modules/+nansen/+module/+general/+core/+tablevariable/+session

modules/+nansen/+module/+general/+core/+tablevariable/+session/deprecated

modules/+nansen/+module/+general/+core/+tablevariable/+subject

modules/+nansen/+module/+ophys/+macroscope

modules/+nansen/+module/+ophys/+macroscope/+fileadapter

modules/+nansen/+module/+ophys/+twophoton/+fileadapter

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+data/+open

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+data/+view

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+plot

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+autoSegmentation

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+deconvolution

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+imageProcessing

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+motionCorrection

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+roiCuration

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+roiRegistration

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+signalExtraction

modules/+nansen/+module/+ophys/+twophoton/+utility

modules/+nansen/+module/+ophys/+twophoton/+utility/+mscan

modules/+nansen/+module/+ophys/+twophoton/+utility/+prairieview

modules/+nansen/+module/+ophys/+twophoton/+utility/+scanimage

modules/+nansen/+module/+ophys/+twophoton/+utility/+sciscan

modules/+nansen/+module/+ophys/+twophoton/+utility/+thorlabs

shortcuts

shortcuts/+nansen

tools

tools/+roimanager

tools/+roimanager/+autosegment

tools/+roimanager/+binarize

tools/+roimanager/+enum

tools/+roimanager/+eventdata

tools/+roimanager/+fileio

tools/+roimanager/+imtools

tools/+roimanager/+pointerTool

tools/+roimanager/+roitools

tools/+roimanager/+utilities

tools/+roimanager/resources/icons

tools/+timetable

wrappers

wrappers/+nansen/+plugin/+imviewer

wrappers/+nansen/+plugin/+signalviewer

wrappers/+nansen/+toolbox

wrappers/+nansen/+wrapper/+abstract

wrappers/+nansen/+wrapper/+extract

wrappers/+nansen/+wrapper/+extract/+util

wrappers/+nansen/+wrapper/+extract/@Options

wrappers/+nansen/+wrapper/+extract/@Processor

wrappers/+nansen/+wrapper/+extract/@ProcessorT

wrappers/+nansen/+wrapper/+flowreg

wrappers/+nansen/+wrapper/+flowreg/+presets

wrappers/+nansen/+wrapper/+flowreg/+utility

wrappers/+nansen/+wrapper/+flowreg/@Options

wrappers/+nansen/+wrapper/+flowreg/@Processor

wrappers/+nansen/+wrapper/+normcorre/+presets

wrappers/+nansen/+wrapper/+normcorre/+utility

wrappers/+nansen/+wrapper/+normcorre/@Options

wrappers/+nansen/+wrapper/+normcorre/@Processor

wrappers/+nansen/+wrapper/+quicky/+presets

wrappers/+nansen/+wrapper/+quicky/+utility

wrappers/+nansen/+wrapper/+quicky/@Options

wrappers/+nansen/+wrapper/+quicky/@Processor

wrappers/+nansen/+wrapper/+suite2p

wrappers/+nansen/+wrapper/+suite2p/+utility

wrappers/+nansen/+wrapper/+suite2p/@Options

wrappers/+nansen/+wrapper/+suite2p/@Processor

Versione Pubblicato Note della release
0.11.0

Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.
Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.