CODIS

Versione 1.28.0.0 (507 KB) da Giuseppe Cardillo
Combined DNA Index System: a GUI tool for forensic paternity lawsuit
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Aggiornato 19 nov 2013

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This GUI is a tool to compute the Paternity Index in a lawsuit for paternity attribution or exclusion. It is possible to use the Applied Biosystems, Promega or Biotype forensic kits. The GUI can be use in presence or in absence of the mother's data. If the alleged father is not available (in case of death) it is possible to setup the procedure using a father's relative. The GUI also has a module for incest lawsuit. Data can be saved and reloaded. Moreover there are several demo and info of the used STRs.
Before to compute PI, the GUI checks if "mater certa est" and if Mother and Child samples were swapped.
Now it computes also reverse parentage: this is the case to adopt in case of kidnapping or suspect baby exchange into the nursery

Cita come

Giuseppe Cardillo (2024). CODIS (https://www.mathworks.com/matlabcentral/fileexchange/24111-codis), MATLAB Central File Exchange. Recuperato .

Compatibilità della release di MATLAB
Creato con R2010a
Compatibile con qualsiasi release
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Categorie
Scopri di più su Genomics and Next Generation Sequencing in Help Center e MATLAB Answers
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alleles/

subroutines/

Versione Pubblicato Note della release
1.28.0.0

some improvements in report routines
1.27.0.0

bug correction in Brenner mutation model in Child-Alleged Father scenario
1.26.0.0

minor bug correction in reports menu
1.25.0.0

Bug corrections in DEMO sections; some other minor "make-up"
1.24.0.0

bug correction in Reverse Parentage results presentation (computation is correct)
1.23.0.0

Added the reverse parentage subroutine
1.22.0.0

Promega Powerplex 18 kit was added;
minor bug correction in reportmenu soubroutines
1.21.0.0

minor bug correction in CODIS3 subroutine
1.20.0.0

some little improvements into report phase
1.18.0.0

New format for reports
1.17.0.0

several little programming improvements.
Two Demos added.
Now the GUI checks also if "mater certa est"
1.16.0.0

In the last update, the GUI checks for possible swap of mother-child samples. The alleged father-child swap is not needed because it will show many maternal mismatches.

1.14.0.0

GUI doesn't show the posterior probability of kinship. You will find in the report a table with posterior probabilities as function of prior odds
1.13.0.0

Tutankhamun's demo added; STRinfo report added; code sped up.
1.12.0.0

All power of exclusion menu were split in 3:
No mutational events considered
2 or more loci exclusion
3 or more loci exclusion
1.11.0.0

All routines were revisited. HTML files are more adherent to WC3 standard. Sibship index was added. GUI for load and save file.
1.10.0.0

Mean Exclusion Chance added in the Paternity Statistics
1.7.0.0

Changes in description
1.6.0.0

A more detailed report is generated. Another little bug was corrected
1.5.0.0

Bug correction in CODIS3 PItemp computation. Correction in the report creation
1.4.0.0

Correction of a bug in CODIS3 module
1.3.0.0

A Report Menu to generate an html report of the results was added
1.2.0.0

In this version, a module for incest lawsuit was added.
Frequencies of populations were corrected.
1.1.0.0

Citation added in the help section
1.0.0.0