How do I exemplify this function through a script?

Hello everybody. I hope you are ok. This function was given to me, read_segmentation(), and now I have to develop a script that exemplifies the use of this function.

This function for a given exam and patient, allows theuser chooses an anatomical structure (within the available segmentations) and displays it graphically. The regions of interest (eg lungs) must be represented at the level of original intensity and pixels that do not match the regions of interest must be represented in black.

I have an excel file.

I know it's a little long but if you could help me I would appreciate it.

Thanks

function [image]=read_segmentation(CXRID)
reply = input (['Are you sure the exam ID(' CXRID ') is correct?:\n1)Yes\n2)No\n']);  % Confirm that the written exam ID is correct,
switch reply                                                                            % dando a opportunity to correct it if it is incorrect.
    case {1}
        disp('');
    case {2}
        CXRID=input('Re-enter exam ID:','s');
end

[~,CID] = xlsread ('Data.xlsx','Sheet2','A2:A21');%Import of values to put in field 'CRX_ID'
[~,dateC] = xlsread ('Data.xlsx','Sheet2','B2:B21');%Importing the values to be placed in the 'Date' field
[~,PIDC] = xlsread ('Data.xlsx','Sheet2','C2:C21');%Importing the values to put in the 'Patient_ID' field
[~,Rep] = xlsread ('Data.xlsx','Sheet2','D2:D21');%Importing the values to be placed in the 'Report' field
ImageData = struct('CRX_ID',CID,'Date',dateC,'Patient_ID',PIDC,'Report',Rep);

d=struct2cell(ImageData); % Converts the data structure of exams to cell format, which will facilitate operations.
e=size(d); % Determines the number of existing rows and columns of cells.
j=0; % Set j=0, which will allow you to check if the exam ID exists in the database

for f=1:e(2)              %In this cycle, the written exam ID will be checked. 
    if d(1,f)==CXRID;     %exists in the database, by comparing this
        j=1;              %string with the existing strings of the cells in row 1
    else                  
        k=0;
    end
end

if j==1
    msg = "Want to see the heart or the lungs"; %Already in this cycle, by opening a menu.
    opts = ["Lungs" "Heart"];             %the user will be able to choose the structure that
    choice2 = menu(msg,opts);                 %intends to analyze.
    if choice2==1
        d1='lungs'
    else
        d1='heart';
    end
    
    D=dir(strcat(CXRID,'_',d1,'.png'))        % Returns a structure with data referring to the name of the written file, its location, its date, etc.
    
    if size(D)==[0 1]                        % Analyzes whether this file exists in the database. If it does not exist, its dimension will be [0 1].
        error('The person has not taken to this anatomical structure!')
    else
        E=string(strcat(CXRID,'_',d1,'.png')); % Joins all the text segments to create a single variable with the full name of the image we want to open.
        A=imread(strcat(E));                   % Reads the image in black and white and a matrix is created.
        B=imread(strcat(CXRID,'.png'));        % Reads the entire exam image and a matrix is created.
        C=zeros(2048,2048);
        for o=1:2048                          
            for p=1:2048                       %Cycle through which the white pixels of image A (segment of the anatomical structure) are replaced,
                if A(o,p)==0                   %by the original pixels of the full scan, with the black pixels remaining.
                    C(o,p)=0;          
                else
                    C(o,p)=B(o,p);
                end
            end
        end
        newmatrix = rescale(C, 0, 255);    % The image is scaled so that the values are between 0 and 255(RGB)
        newmatrix = uint8(newmatrix);     %The double matrix is converted to uint8.
        image=imshow(newmatrix, []);       % Exposure of the previously read image.
    end
end
end

[Stephen23]

@Joao Joao: what is your question? How can we help you?

[Joao Joao]

My question is how do I develop a script that exemplifies the use of this function:

function [image]=read_segmentation(CXRID)

[Torsten]

For native speaker the question might be clear, but what exactly do you mean by "exemplify" ?

[DGM]

"exemplify" = "demonstrates the usage of"

... is my assumption.

Just throwing that out there. I'm elsewhere at the moment, otherwise I'd play with it.

[Torsten]

Thank you.

So you think that the OP should show by his inputs how to handle the program ?

Maybe Joao Joao can explain in more detail.

[Joao Joao]

Yes, that's it.

"exemplify" = "demonstrates the usage of"

If you can help me, I would appreciate it.

Thanks

[Torsten]

From my naive understanding: Run the program and document the necessary inputs.

What's the problem ?

[Joao Joao]

This is a script with this function (that was given to me).

Now I just want to create another script that demonstrates the usage of this function.

For exemple:

In this same context I had a function (add_patient) that added a new patient with new data (weight, height, report). I created a script that demonstrates the usage of this function:

file = 'filename'; % Use the name of the excel file, and omit the extention.

table = table2struct(readtable(file)); % The script updates a struct, so read in the excel file as a table and convert to a struct.

table = add_patient(table); % Run the function on the struct and update the table.

writetable(table,file); % Overwrite the excel file.

Now I have to do the same for this function(read_segmentation). How can I do this?

Thanks

[Joao Joao]

I didn't create this function. This function was given to me and now I have to create a new script that demonstrates the usage of this function.

[Bjorn Gustavsson]

You will first have to learn how to use the function in all possible ways, then describe that and whatever (pre and post) processing that is associated with that. There will not be much else we can say about this topic without pretty much doing the same...

[Joao Joao]

Thanks