parfor with BioIndexedFile?
Mostra commenti meno recenti
Is it possible to use parfor with a BioIndexedFile? I have tried, and Matlab seems to gag on it.
Example:
B=BioIndexedFile('fastq','P.fastq');
parfor n=1:1e6
a=read(B,n);
%some operations here
end
It doesn't seem to matter how simple the operations are. The machine runs out of memory, and doesn't seem to start the task. Perhaps it is trying to make a copy of the BioIndexedFile for each worker?
Risposte (1)
Walter Roberson
il 13 Nov 2015
0 voti
You might possibly be able to take advantage of http://www.mathworks.com/matlabcentral/fileexchange/31972-worker-object-wrapper
Categorie
Scopri di più su Speech Recognition in Centro assistenza e File Exchange
Prodotti
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!