calculate the volume of tumor in logical image

To Compute the no. of voxel (==1) in logical/binary .mat file

1 Download

Updated 23 Oct 2022

View License

%load your binary/logical image
load(logical.mat)%just example
Voxels = sum(labels(:)==1)
VoxelVol = sum((labels==1).*dV,'all');
%If you have varying size of the voxels, for example if the voxels in the first and last slices are larger than the ones in the centre, then you have to take that into account. For example if the size varies as:
[x,y,z] = meshgrid(1:130,1:130,1:36);
dV = 1 + 4/36^2*(z-18.5).^2;
% To just extract the tumor-flagged voxels from your imstack3-variable you can do just this:
Tumor_vals = imstack3(labels(:));
%If you need to find the location/indices of the tumors you can do:
[idx1] = find(labels(:));
[i1,i2,i3] = ind2sub(size(labels),idx1);
slice(double(imstack3),63,60,7),shading flat
hold on
plot3(i2,i1,i3,'r.')

Cite As

mohd akmal masud (2023). calculate the volume of tumor in logical image (https://www.mathworks.com/matlabcentral/fileexchange/119443-calculate-the-volume-of-tumor-in-logical-image), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2022a
Compatible with any release
Platform Compatibility
Windows macOS Linux

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!
Version Published Release Notes
1.0.0