zapit

Versione 1.0.1.0 (7,94 MB) da Rob Campbell
General purpose optostimulation system
0.0
(0)
17 download
Aggiornato 31 ott 2023
Visualizza la licenza su GitHub

Zapit

View zapit on File Exchange

Zapit is software that runs a scanning opto-stim system for head-fixed mouse behavior.

How it works

A pair of scan mirrors deflect an incoming laser beam, which is focused onto the exposed skull with a lens. This lens is also used to image the sample onto a camera in order to visualise where the beam is pointing. Zapit registers the scanners to the camera, allowing the user to place the beam in any desired location by clicking there on a live image feed. Zapit then registers stereotaxic coordinates into the camera space, allowing the user to point the beam to coordinates defined with respect to bregma. A graphical tool builds experiment coordinate files using a top-down view of the Allen Atlas. There is a simple MATLAB API for integrating stimulation into existing behavioral code and a Python version of the API is also provided.

Install & Usage

See the Installation & User Manual. Please see the list of known obvious bugs and issues. There is a Change Log if you are concerned about applying updates.

Requirements

If any of the above Toolboxes are included in your licence but not installed, you may install them using the Add On Manager.

Contributing

Code was written by Maja Skretowska and Rob Campbell at the Sainsbury Wellcome Centre (UCL) in 2021/2022. Contributions and collaborations are welcome. Please see the CONTRIBUTING.md file for more information.

Related Projects

Inspiration

This project was inspired by studies from Svoboda and Tank and Brody.

Cita come

Rob Campbell (2024). zapit (https://github.com/Zapit-Optostim/zapit/releases/tag/v1.0.1), GitHub. Recuperato .

Compatibilità della release di MATLAB
Creato con R2022b
Compatibile con qualsiasi release
Compatibilità della piattaforma
Windows macOS Linux
Categorie
Scopri di più su Microscopy in Help Center e MATLAB Answers

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

development

development/@testCamera

development/mainGUI

development/recordWaveforms

development/stimConfigGUI

development/stimuli

examples/externalTrigger

examples/minimalWaveformPresentation

examples/running_experiments

tests

tests/interactive

zapit

zapit/+zapit

zapit/+zapit/+gui/+main

zapit/+zapit/+gui/+main/@controller

zapit/+zapit/+gui/+stimConfigEditor

zapit/+zapit/+gui/+stimConfigEditor/@controller

zapit/+zapit/+hardware

zapit/+zapit/+hardware/+DAQ/@dotNETwrapper

zapit/+zapit/+hardware/+DAQ/@vidriowrapper

zapit/+zapit/+hardware/+vidrio_daqmx

zapit/+zapit/+hardware/+vidrio_daqmx/+idioms

zapit/+zapit/+hardware/+vidrio_daqmx/+private

zapit/+zapit/+hardware/+vidrio_daqmx/+util

zapit/+zapit/+hardware/+vidrio_daqmx/@Task

zapit/+zapit/+hardware/+vidrio_daqmx/private

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_19_0_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_19_1_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_19_5_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_19_6_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_20_0_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_20_1_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_20_7_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_21_0_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_21_3_x/x64

zapit/+zapit/+hardware/+vidrio_daqmx/private/NIDAQmx_21_8_x/x64

zapit/+zapit/+hardware/@camera

zapit/+zapit/+interfaces

zapit/+zapit/+interfaces/@TCPserver

zapit/+zapit/+settings

zapit/+zapit/+simulated/@DAQ

zapit/+zapit/+simulated/@camera

zapit/+zapit/+stimConfig

zapit/+zapit/+updater

zapit/+zapit/+utils

zapit/+zapit/+yaml

zapit/+zapit/+yaml/Tests

zapit/+zapit/+yaml/extras

zapit/+zapit/@pointer

zapit/+zapit/@stimConfig

Versione Pubblicato Note della release
1.0.1.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v1.0.1
1.0.0.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v1.0.0
0.13.1.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.13.1
0.12.1.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.12.1
0.12.0.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.12.0
0.11.1.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.11.1
0.11.0.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.11.0
0.10.6.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.10.6
0.10.4.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.10.4
0.10.3.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.10.3
0.10.2.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.10.2
0.10.0

See release notes for this release on GitHub: https://github.com/Zapit-Optostim/zapit/releases/tag/v0.10.0
Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.
Per visualizzare o segnalare problemi su questo componente aggiuntivo di GitHub, visita GitHub Repository.