A simple BLAST algorithm

Versione 1.3 (9,53 KB) da Ligong Han
A simple BLAST algorithm based on a simple dynamic programming strategy.
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Aggiornato 10 mar 2015

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The function implements a BLAST (Basic Local Alignment Search Tool) algorithm using a simple dynamic programming strategy. A self-defined vTree class is also included, on which the "Reconstruct" process is based. The data of the tree is stored in a vector. The idea is inspired by the union-find algorithm.

Cita come

Ligong Han (2024). A simple BLAST algorithm (https://www.mathworks.com/matlabcentral/fileexchange/49003-a-simple-blast-algorithm), MATLAB Central File Exchange. Recuperato .

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myblast/

myblast/@vTree/

Versione Pubblicato Note della release
1.3

- vTree class updated: fixed an error of the 'delChild' method
1.2.0.0

- Updated vTree
1.1.0.0

- a missing file added
- method of vTree class added
1.0.0.0