CSA-QBI and Hough Tractography for Diffusion MRI

I. Aganj, "Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography Toolbox", 2021. www.nitrc.org/projects/csaodf-hough

Aganj, Iman, et al. “Reconstruction of the Orientation Distribution Function in Single- and Multiple-Shell q-Ball Imaging within Constant Solid Angle.” Magnetic Resonance in Medicine, vol. 64, no. 2, Wiley, June 2010, pp. 554–66, doi:10.1002/mrm.22365.

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Aganj, Iman, et al. “A Hough Transform Global Probabilistic Approach to Multiple-Subject Diffusion MRI Tractography.” Medical Image Analysis, vol. 15, no. 4, Elsevier BV, Aug. 2011, pp. 414–25, doi:10.1016/j.media.2011.01.003.

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Aganj, Iman. “Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity.” Scientific Reports, vol. 8, no. 1, Springer Science and Business Media LLC, Nov. 2018, doi:10.1038/s41598-018-34940-4.

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I. Aganj, G. Prasad, P. Srinivasan, A. Yendiki, P. M. Thompson, and B. Fischl, “Structural brain network augmentation via Kirchhoff's laws,” in Proceedings of the Joint Annual Meeting of ISMRM-ESMRMB, Milan, Italy, 2014. https://cds.ismrm.org/protected/14MProceedings/PDFfiles/2665.pdf

Aganj, Iman, et al. “Exploratory Correlation of the Human Structural Connectome with Non‐MRI Variables in Alzheimer’s Disease.” Alzheimer’s Dementia: Diagnosis, Assessment Disease Monitoring, vol. 15, no. 4, Wiley, Oct. 2023, doi:10.1002/dad2.12511.

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Versione	Pubblicato	Note della release
2.1	24 mag 2024	Bug fixes.	Scarica
2.0	26 giu 2021	New functions have been added for connectivity computation (connMatrix, FreeSurferLUT) and augmentation (augConnMatrix), and DTI analysis (reconDT, DT2ODF). Further updates and bug fixes.	Scarica
1.13	18 dic 2018	Minor update.	Scarica
1.12	9 nov 2018	Minor update.	Scarica
1.11	5 nov 2018	Minor update.	Scarica
1.1	29 ott 2018	The gradient-table verification function checkGradTable.m has been added (Aganj et al, Sci Rep 2018).	Scarica
1.0.6.0	14 mar 2018	Minor update.	Scarica
1.0.5.0	14 mar 2018	ODFs can now be visualized by choosing either magnitude or orientation color-coding.	Scarica
1.0.4.0	21 nov 2017	Minor update in visualization.	Scarica
1.0.3.0	18 apr 2017	Minor update.	Scarica
1.0.2.0	12 apr 2017	Minor update.	Scarica
1.0.1.0	12 apr 2017	Minor update.	Scarica
1.0.0.0	11 apr 2017		Scarica

MLA	Aganj, Iman, et al. “Reconstruction of the Orientation Distribution Function in Single- and Multiple-Shell q-Ball Imaging within Constant Solid Angle.” Magnetic Resonance in Medicine, vol. 64, no. 2, Wiley, June 2010, pp. 554–66, doi:10.1002/mrm.22365.
APA	Aganj, I., Lenglet, C., Sapiro, G., Yacoub, E., Ugurbil, K., & Harel, N. (2010). Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle. Magnetic Resonance in Medicine, 64(2), 554–566. Wiley. Retrieved from https://doi.org/10.1002%2Fmrm.22365
BibTeX	@article{Aganj_2010, doi = {10.1002/mrm.22365}, url = {https://doi.org/10.1002%2Fmrm.22365}, year = 2010, month = {jun}, publisher = {Wiley}, volume = {64}, number = {2}, pages = {554--566}, author = {Iman Aganj and Christophe Lenglet and Guillermo Sapiro and Essa Yacoub and Kamil Ugurbil and Noam Harel}, title = {Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle}, journal = {Magnetic Resonance in Medicine} }

MLA	Aganj, Iman, et al. “A Hough Transform Global Probabilistic Approach to Multiple-Subject Diffusion MRI Tractography.” Medical Image Analysis, vol. 15, no. 4, Elsevier BV, Aug. 2011, pp. 414–25, doi:10.1016/j.media.2011.01.003.
APA	Aganj, I., Lenglet, C., Jahanshad, N., Yacoub, E., Harel, N., Thompson, P. M., & Sapiro, G. (2011). A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography. Medical Image Analysis, 15(4), 414–425. Elsevier BV. Retrieved from https://doi.org/10.1016%2Fj.media.2011.01.003
BibTeX	@article{Aganj_2011, doi = {10.1016/j.media.2011.01.003}, url = {https://doi.org/10.1016%2Fj.media.2011.01.003}, year = 2011, month = {aug}, publisher = {Elsevier {BV}}, volume = {15}, number = {4}, pages = {414--425}, author = {Iman Aganj and Christophe Lenglet and Neda Jahanshad and Essa Yacoub and Noam Harel and Paul M. Thompson and Guillermo Sapiro}, title = {A Hough transform global probabilistic approach to multiple-subject diffusion {MRI} tractography}, journal = {Medical Image Analysis} }

MLA	Aganj, Iman. “Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity.” Scientific Reports, vol. 8, no. 1, Springer Science and Business Media LLC, Nov. 2018, doi:10.1038/s41598-018-34940-4.
APA	Aganj, I. (2018). Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity. Scientific Reports, 8(1). Springer Science and Business Media LLC. Retrieved from https://doi.org/10.1038%2Fs41598-018-34940-4
BibTeX	@article{Aganj_2018, doi = {10.1038/s41598-018-34940-4}, url = {https://doi.org/10.1038%2Fs41598-018-34940-4}, year = 2018, month = {nov}, publisher = {Springer Science and Business Media {LLC}}, volume = {8}, number = {1}, author = {Iman Aganj}, title = {Automatic Verification of the Gradient Table in Diffusion-Weighted {MRI} Based on Fiber Continuity}, journal = {Scientific Reports} }

MLA	Aganj, Iman, et al. “Exploratory Correlation of the Human Structural Connectome with Non‐MRI Variables in Alzheimer’s Disease.” Alzheimer’s Dementia: Diagnosis, Assessment Disease Monitoring, vol. 15, no. 4, Wiley, Oct. 2023, doi:10.1002/dad2.12511.
APA	Aganj, I., Mora, J., Frau‐Pascual, A., & Fischl, B. (2023). Exploratory correlation of the human structural connectome with non‐MRI variables in Alzheimer’s disease. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 15(4). Wiley. Retrieved from http://dx.doi.org/10.1002/dad2.12511
BibTeX	@article{Aganj_2023, title={Exploratory correlation of the human structural connectome with non‐MRI variables in Alzheimer’s disease}, volume={15}, ISSN={2352-8729}, url={http://dx.doi.org/10.1002/dad2.12511}, DOI={10.1002/dad2.12511}, number={4}, journal={Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring}, publisher={Wiley}, author={Aganj, Iman and Mora, Jocelyn and Frau‐Pascual, Aina and Fischl, Bruce}, year={2023}, month=oct }

CSA-QBI and Hough Tractography for Diffusion MRI

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