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BrainSlicer

version 1.0 (137 MB) by Daniele Mascali
Visualize and print volumetric brain data

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Updated 29 Jul 2021

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BrainSlicer

BrainSlicer is a MATLAB-based visualization tool for volumetric brain data. Its main purpose is to produce publication-level figures.

BrainSlicer main functionalities include:

  • possibility of overlaying multiple images with tunable opacity.
  • thresholding and clusterization of each layer
  • visualize colorbar for each desired layer
  • handy visualization of p-value maps as (1-p)
  • ~ 100 colormaps available (including FSL and brain colours maps)

BrainSlicer is composed of three main programs:

  • slicer.m - the main tool, visualizes and prints nifti images.
  • slicerCollage.m - combines several images produced by slicer.m in a single figure.
  • colormaps.m - shows all the available colormaps and their code for ease of selection.

REQUIREMENTS

BrainSlicer requires:

  • SPM
  • MATLAB version >= R2014b

Cite As

Daniele Mascali (2021). BrainSlicer (https://github.com/dmascali/BrainSlicer/releases/tag/1.0), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2020a
Compatible with R2014b and later releases
Platform Compatibility
Windows macOS Linux

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To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.