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emjey


Last seen: 3 giorni fa |  Attivo dal 2018

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I am working on the development of models and software in biotech industry

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Risposto
Change the zeros to ones and the ones to zeros.
you can do it in one line like this >> V = [ 1, 1, 1, 1, 0, 1, 0, 1]; >> abs(V-1) ans = 0 0 0 0 1 0...

circa un mese fa | 0

Domanda


Is it possible to display initial assignments and/or parameters in SimBiology diagram?
Essentially, what the title says. I remember all assignments used to be displayed by default. Now, with R2022a only repeated ass...

circa 2 mesi fa | 1 risposta | 0

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Domanda


Is it possible to deactivate all reactions within a compartment in SimBiology?
I would like to test a selected submodule of my model, which amounts to switching off other unwanted compartments which contain ...

2 mesi fa | 1 risposta | 0

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Domanda


how to re-assign parameter value assigned in an active variant in SimBiology?
Hi, I cannot re-assign a value to a parameter, kdeg, defined in the active variant, variant1. The following code shows the step...

4 mesi fa | 1 risposta | 0

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Domanda


selecting and re-assignment of non-existing parameters in SimBiology does not trigger any warning?
Selection by name and re-assignment of model parameters can be done like this tempVar = sbioselect(modelObj1,'Name','p1'); set(...

4 mesi fa | 2 risposte | 0

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Domanda


Suggetsed improvements list in SimBiology
hi SimBiology team, here a list of things I recenlty found in SimBiology not working or worth improving - roughly in the order o...

6 mesi fa | 1 risposta | 0

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Domanda


SimBiology parameter estimation for a series of single dose-response data
I would like to estimate set of parameters from a series of experiments with different doses and single measurement points. I.e....

6 mesi fa | 1 risposta | 0

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Domanda


Build-in unit conversion in SimBiology
I wonder if you can provide resource with proper definition of units. What one gets with sbiowhos -builtin -unit does not make s...

7 mesi fa | 1 risposta | 0

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Domanda


Is specifying objective fuction for multiple variables in SimBiology possible?
I have a question about specification of objective function for multiple variables simultanously in SimBiology. Is it possible a...

7 mesi fa | 1 risposta | 0

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Domanda


Incorrect units in simple reaction in SimBiology?
I wonder why SimBiology does not detect any issues in the following model. A cell, Cell, is producing signaling molecule, Sig,...

7 mesi fa | 1 risposta | 0

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Domanda


Issues with doses/variants in parfor loop in SimBiology
I have a question about runing the sbproj models in parfor loop 1. I load project and set up the solver: sbioloadproject('mode...

circa 3 anni fa | 1 risposta | 0

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Domanda


using MaximumWallClock in a loop
I run many simulations in a loop (global sensitivity analysis) and would like to terminate stuck simulations by setting 'Maxim...

circa 3 anni fa | 2 risposte | 0

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Domanda


how to plot non-standard contour plots
I would like to plot following contour plots representing two dimensional cumulative distributon functions (CDF) given the data ...

circa 3 anni fa | 0 risposte | 0

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Risposto
How to run sbproj using sbiosimulate with a selected dose in SimBiology?
OK, I found it out, I was missing the dose object modelName = 'AntibacterialPKPD.sbproj'; sbioloadproject(modelName,'m1') d1 ...

oltre 3 anni fa | 1

Domanda


How to run sbproj using sbiosimulate with a selected dose in SimBiology?
Consider the predefiend doses '250 mg bid', '250 mg tid', etc. in the model AntibacterialPKPD.sbproj, see screenshot I am una...

oltre 3 anni fa | 1 risposta | 0

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Risposto
Fail to start parpool
See this discussion below, it should answer your problem: https://uk.mathworks.com/matlabcentral/answers/196549-failed-to-start...

oltre 3 anni fa | 0

Domanda


How to handle warnings in SimBiology within series of simulations?
To perform a sensitivity analysis I am running *.sbproj coded models using 'biosimulate' in a for-loop and see for some paramete...

oltre 3 anni fa | 1 risposta | 0

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Risposto
what is the reason for this error ?
Check the following out, this should help: https://uk.mathworks.com/matlabcentral/answers/130609-matlab-coder-build-error-compi...

oltre 3 anni fa | 0

| accettato

Risposto
Problem regarding reading excel file in a loop
It seems your issue was answered here https://uk.mathworks.com/matlabcentral/answers/349109-read-in-excel-sheets-with-a-loop

oltre 3 anni fa | 0

| accettato

Domanda


parfor error for global SA Morris method using SimBiology
hi, I am trying to use parallel toolbox to speed up my global SA with Morris method. Basically it averages elementary effects fo...

oltre 3 anni fa | 1 risposta | 0

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Risposto
Issue with SimBiology - parameters from valid .sbproj not loading
OK, problem solved. This is to me a bug in the display of parameters - only those parameters which are visible on the diagram ...

oltre 3 anni fa | 0

Domanda


Issue with SimBiology - parameters from valid .sbproj not loading
Hi, I am having an issue pertaining to some *.sbproj models. See for example the attached simple Lotka model version. While the...

oltre 3 anni fa | 2 risposte | 0

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Domanda


Issue with parameter array sorting in SimBiology after loading using sbioloadproject
When I load a .sbproj the parameters are often in seemingly random order. Consider the example model 'AntibacterialPKPD.sbproj' ...

oltre 3 anni fa | 1 risposta | 0

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Domanda


'MassAction' versus 'unknown' kinetic law (SimBiology)
I have implemented a simple model A <-> B in SimBiology in 2 versions – both using reversible reactions * version1:...

oltre 4 anni fa | 1 risposta | 1

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Domanda


stoichiometry of cell proliferation
While encoding a simple model of cell proliferation/death with rates r*X and d*X, which should result in an ODE such as dX/dt = ...

circa 5 anni fa | 1 risposta | 0

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