Previous Research and Development
Effects of Covid-19 on Crude Oil Price and Future Forecast Using a Model Application and Machine Learning
Azubuike H Amadi et al, European Journal of Engineering Research and Science (EJERS), December 2020
paper
The interplay of movement and spatiotemporal variation in transmission degrades pandemic control
Nicholas Kortessis et al, Proceedings of the National Academy of Sciences, October 5 2020
paper
A dynamical framework for modeling fear of infection and frustration with social distancing in COVID-19 spread
Matthew D. Johnston and Bruce Pell, Mathematical Biosciences and Engineering, August 18 2020
paper
Value of PET/CT and MATLAB in Detection of COVID-19 in an Oncology Patient - Case Report
Michael Masoomi et al, American Journal of Internal Medicine, August 25 2020
paper
Animation of COVID-19 Weekly Cases in England
Duncan Barclay, MATLAB File Exchange, July 2020
MATLAB code
A systematic approach for COVID-19 predictions and parameter estimation
Vishal Srivastava et al, Personal and Ubiquitous Computing, November 6 2020
paper
Analysis of second outbreak of COVID-19 after relaxation of control measures in India
Xinchen Yu et al, Nonlinear Dynamics, October 10 2020
paper
Dynamic graph based epidemiological model for COVID-19 contact tracing data analysis and optimal testing prescription
Shashanka Ubaru et al, arXiv, September 17 2020
paper preprint
Analysis of the fractional corona virus pandemic via deterministic modeling
Nguyen Huy Tuan et al, Mathematical Models in the Applied Sciences, September 6 2020
paper
Group Testing for COVID-19: How to Stop Worrying and Test More
Lakshmi Narasimhan Theagarajan, arXiv, April 15 2020
paper preprint and MATLAB code
Stability analysis of mathematical model new corona virus (COVID-19) disease spread in population
Abderrahim Labzai et al, Communications in Mathematical Biology and Neuroscience, July 14 2020
paper
Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors
Aviv Bergman et al, mSystems, July 14 2020
paper
Modeling and forecasting the spread tendency of the COVID-19 in China
Deshun Sun et al, Advances in Difference Equations, 2020
paper
Time, space and social interactions: exit mechanisms for the Covid-19 epidemics
Antonio Scala et al, Nature, August 13 2020
paper
A cost–benefit analysis of the COVID-19 disease
Rowthorn and Maciejowski, Oxford Review of Economic Policy, August 29 2020
paper
Modeling Reading Ability Gain in Kindergarten Children during COVID-19 School Closures
Xue Bao et al, Internal Journal of Environmental Research and Public Health, September 1 2020
paper
COVID19 Data Fitting with Linear and Nonlinear Regression
Lorand Gabriel Parajdi, MATLAB File Exchange, August 2020
MATLAB code
fitVirusCOVID19
Milan Batista, MATLAB File Exchange, March 2020
MATLAB function
Short-term predictions and prevention strategies for COVID-19: A model-based study
Sk Shahid Nadim et al, arXiv, July 22 2020
paper preprint
Clinical decision support tool and rapid point-of-care platform for determining disease severity in patients with COVID-19
Michael P. McRae et al, Lab on a Chip, June 3 2020
paper
Battling COVID-19 with disinfecting robots
Behind the Headlines, April 23, 2020
blog post
Deep Learning for Medical Imaging: COVID-19 Detection
Barath Narayanan, University of Dayton Research Institute
Deep Learning blog, March 18, 2020
blog post with MATLAB code
An interpretable mortality prediction model for COVID-19 patients - alternative approach
Peter Gemmar, medRxiv, June 22 2020
paper preprint
Social Distancing Monitoring System
Wanbin Song, MATLAB File Exchange, June 10 2020
MATLAB code
Confinement Time Required to Avoid a Quick Rebound of COVID-19: Predictions From a Monte Carlo Stochastic Model
Társilo Girona, Frontiers in Physics, May 8 2020
paper
Antihypertensive drugs in COVID-19 infection
Pinto-Siestsma et al, European Heart Journal, June 5 2020
paper
Modeling and prediction of COVID-19 in Mexico applying mathematical and computational models
Torrealba-Rodriguez O et al, Chaos, Solitons, and Fractals, May 30 2020
paper
Forecast Possible Risk for COVID-19 Epidemic Dissemination Under Current Control Strategies in Japan
Zhongxiang Chen et al, Internal Journal of Environmental Research and Public Health, May 29 2020
paper
Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network
Asmaa Abbas et al, medRxiv, May 18 2020
paper preprint
Using early data to estimate the actual infection fatality ratio from COVID-19 in France
Lionel Roques et al, medRxiv, May 7 2020
paper preprint
Automatic Identification of SARS Coronavirus using Compression-Complexity Measures
Karthi Balasubramanian et al,bioRxiv, March 27 2020
paper preprint and MATLAB code
An SIR model with behavior
John Cochrane, The Grumpy Economist, May 4 2020
blog with MATLAB code
Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia
Qun Li, M. Med et al, New England Journal of Medicine (NEJM), March 26, 2020
paper
Data-based analysis, modelling and forecasting of the COVID-19 outbreak
Cleo Anastassopoulou et al, NCBI, March 31, 2020
paper
Modelling the Situation of COVID-19 and Effects of Different Containment Strategies in China with Dynamic Differential Equations and Parameters Estimation
Xiuli Liu et al, Academy of Mathematics and System Science, medRxiv, March 9, 2020
paper preprint
ReCOVER
Ajitesh Srivastava et al, arXiv, April 27 2020
paper preprint and MATLAB code and video
Computer Vision For COVID-19 Control: A Survey
Anwaar Ulhaq et al, arXiv, May 5 2020
paper preprint
Matlab Wrapper for Johns Hopkins University's COVID-19 Data Set
Brian Munsky, GitHub, March 2020
GitHub repo with data, MATLAB code and app
Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2
Yadi Zhou et al, nature.com, March 2, 2020
paper and Github repo with MATLAB code
Healthcare impact of COVID-19 epidemic in India: A stochastic mathematical model
Kaustuv Chatterjee et al, ScienceDirect, April 2 2020
paper
COVID-19 forecasting based on an improved interior search algorithm and multi-layer feed forward neural network
Rizk M. Rizk-Allah et al, arXiv, April 6 2020
paper
Analyzing Novel Corona Virus COVID-19 Dataset
Toshi Takeuchi, Loren on the Art of MATLAB blog, March 16, 2020
blog post with MATLAB code using Kaggle dataset
Coronavirus Projections
Wayne Moss, Cummins Inc.,
March 24, 2020
LinkedIn post with MATLAB code
El modelo SEIRV aplicado a la epidemia de coronavirus en Wuhan, China
Francisco Villatoro, La Ciencia de la Mula Francis blog, March 14, 2020
blog post with MATLAB code (en español)
Face masks considerably reduce COVID-19 cases in Germany
Timo Mitze et al, Proceedings of the National Academy of Sciences, December 3 2020
paper
A fractional order approach to modeling and simulations of the novel COVID-19
Isaac Owusu-Mensah et al, Adv Differ Equ, December 3 2020
paper
Example of Steady-State Electric-Current Modeling of a Complicated Cellular Topology with Boundary Element Fast Multipole Method
Vishwanath Iyer et al, Brain and Body Modeling, August 6 2020
paper
The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study
Trystan Leng et al, Wellcome Open Research, September 10 2020
pre-review paper
The average age of a new COVID test (whose results were returned within the last 14 days) is 2.4 days (8/6/20)
u/Johnsmith226, reddit.com, August 2020
social post
Modelling the role of optimal social distancing on disease prevalence of COVID-19 epidemic
Sangeeta Saha & G.P. Samanta, International Journal of Dynamics and Control, November 9 2020
paper
Effects of information-induced behavioural changes during the COVID-19 lockdowns: the case of Italy
Bruno Buonomo and Rosella Della Marca, Royal Society Open Science, September 18 2020
paper
COVIDetectioNet: COVID-19 diagnosis system based on X-ray images using features selected from pre-learned deep features ensemble
Muammer Turkoglu, Applied Intelligence, September 18 2020
paper
The Distributional Effects of Covid-19 and Mitigation Policies
Sewon Hur, SSRN, September 2020
paper
On modeling of coronavirus-19 disease under Mittag-Leffler power law
Samia Bushnaq et al, Advances in Difference Equations, September 11 2020
paper
Applications in Response to COVID-19: Mask Detection
Wanbin Song, Deep Learning, June 11 2020
Blog post and MATLAB code
The end of social confinement and COVID-19 re-emergence risk
Leonardo López and Xavier Rodó, Nature, June 2020
paper
Spatiotemporal transmission dynamics of the COVID-19 pandemic and its impact on critical healthcare capacity
Diego F. Cuadros et al, Health & Place, July 2020
paper
Dynamic modeling and analysis of COVID‐19 in different transmission process and control strategies
Lin Hu and Lin‐Fei Nie, Mathematical Methods in the Applied Sciences, August 29 2020
paper
Herd immunity thresholds for SARS-CoV-2 estimated from unfolding epidemics
Ricardo Aguas et al, medRxiv, August 31 2020
paper preprint and GitHub MATLAB repo
TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection
Xiaoyang Ji et al, bioRxiv, March 2 2020
paper preprint
Non Pharmaceutical Interventions for Optimal Control of COVID-19
Muhmmad Zamir et al, NIH NLM, July 21 2020
paper
social_interaction_network_virus_model
Scott Payne, MATLAB File Exchange, June 24 2020
MATLAB code
COVID 19 Simulator
Nir Gavish, MATLAB File Exchange, June 30 2020
MATLAB app
Differential Effects of Intervention Timing on COVID-19 Spread in the United States
Sen Pei et al, medRxiv, May 20 2020
paper preprint, NYTimes reference, GitHub repo
Individualized System for Augmenting Ventilator Efficacy (iSAVE): A Rapidly deployable system to expand ventilator capacity
Shriya Srinivasan et al, bioRxiv, March 29 2020
paper preprint
Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design
Jacob Kames et al, bioRxiv, March 31 2020
paper preprint
Covid-19: Testing Inequality in New York City
Stephanie Schmitt-Grohé et al, National Bureau of Economic Research, April 2020
working paper
To mask or not to mask: Modeling the potential for face mask use by the general public to curtail the COVID-19 pandemic
Steffen E. Eikenberry et al, medRxiv, April 6 2020
paper preprint
Impact of population mask wearing on Covid-19 post lockdown
Babak and Balaban, Infectious Microbes & Diseases, June 5 2020
paper
STeCC: Smart Testing with Contact Counting Enhances Covid-19 Mitigation by Bluetooth 2 App Based Contact Tracing
Hossein Gorji et al, medRxiv, May 7 2020
paper preprint
Assessing the Risks of Spatial Spread of the New Coronavirus COVID-19
Jiang X et al, Journal of Bacteriology and Mycology, June 4 2020
paper
Insights into the dynamics and control of COVID-19 infection rates
Mark J. Willis et al, PubMed Central, May 28 2020
paper
IKONOS: An intelligent tool to support diagnosis of Covid-19 by texture analysis of x-ray images
Juliana Carneiro Gomes et al, medRxiv, May 9 2020
paper preprint and GitHub repo
Rare and extreme events: the case of COVID-19 pandemic
Machado & Lopez, Nonlinear Dynamics, May 16 2020
paper
Applying chemical reaction transition theory to predict the latent transmission dynamics of coronavirus outbreak in China
Peng Xu, medRxiv, February 25, 2020
paper preprint
COVID-19: Predictive Mathematical Models for the Number of Deaths in South Korea, Italy, Spain, France, UK, Germany, and USA
Athanasios S. Fokas et al, ScienceAdvances, May 12 2020
paper preprint
Dynamic causal modelling of COVID-19
Karl J Friston et al, arXiv, April 9 2020
paper preprint and MATLAB SPM tools
The Outbreak’s Modeling of Coronavirus (COVID-19) Using the Modified SEIR Model in Indonesia
Rustan Rustan et al, Spektra, April 1 2020
paper
A multi-region discrete time mathematical modeling of the dynamics of Covid-19 virus propagation using optimal control
Bouchaib Khajji et al, Journal of Applied Mathematics and Computing, March 1 2020
paper
The Reconstruction and Prediction Algorithm of the Fractional TDD for the Local Outbreak of COVID-19
Yu Chen et al, arxiv.org, February 24, 2020
paper preprint
Harmony-Search and Otsu based System for Coronavirus Disease (COVID-19) Detection using Lung CT Scan Images
V. Rajinikanth et al, April 6 2020
paper preprint
UK Coronavirus Modelling – match to data
Brian Sutton, April 18 2020
blog post
Fighting COVID-19 with computational approaches to repurposing existing drugs
Behind the Headlines, April 23 2020
blog post
Deep Learning Analysis of COVID-19 lung X-Rays using MATLAB
FlyLogical, blogspot.com, April 8, 2020
blog post with MATLAB code
In-host Modelling of COVID-19 Kinetics in Humans
Esteban A. Hernandez-Vargas et al, medRxiv, April 15 2020
paper preprint
TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection
Xiayong, Ji, bioRxiv.org, March 2, 2020
paper preprint
Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens
Estefania Nunez-Bajo et al, bioRxiv.org, March 23, 2020
paper preprint
COVID-19 Findings, Simulations
Ruiyun Li et al, GitHub, March 2020
GitHub repo with MATLAB code, Shaman Group at Columbia University
Patient Flow Dynamics in Hospital Systems During Times of COVID-19: Cox Proportional Hazard Regression Analysis
Sudhir Bhandari et al, Frontiers in Public Health, December 8 2020
paper
Modeling Growth, Containment and Decay of the COVID-19 Epidemic in Italy
Francesco Capuano, Frontiers in Physics, November 30 2020
paper
How long should the COVID-19 lockdown continue?
Jonathan Caulkins et al, PLOS ONE, December 2 2020
paper
A network model of Italy shows that intermittent regional strategies can alleviate the COVID-19 epidemic
Fabio Della Rossa et al, Nature Communications, October 9 2020
paper
The COVID-19 Pandemic in Africa: Predictions using the SIR Model
Musalula Sinkala, medRxiv, June 1 2020
paper preprint and MATLAB code
Topological epidemic model: Theoretical insight into underlying networks
Yoshito Hirata, Chaos: An Interdisciplinary Journal of Nonlinear Science, October 27 2020
paper, MATLAB code
Epidemic Characteristics of COVID-19 in Africa
Lijun Wang et al, Social Physics, September 29 2020
paper
A data driven analysis and forecast of an SEIARD epidemic model for COVID-19 in Mexico
Ugo Avila-Ponce de Leo'n et al, Big Data and Information Analytics, September 23 2020
paper
Haar wavelet collocation approach for the solution of fractional order COVID-19 model using Caputo derivative
Kamal Shah et al, Alexandria Engineering Journal, September 14 2020
paper
Avoiding COVID-19: Aerosol Guidelines
Matthew Evans, medRxiv, June 5 2020
paper preprint
LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding
Jonathan L. Schmid-Burgk et al, bioRxiv, June 8 2020
paper preprint and MATLAB code
SEIRS-based COVID-19 Simulation Package
Mark Kok Yew Ng, COVIDSIM
GitHub MATLAB repo
The effect of control measures on COVID-19 transmission in Italy: Comparison with Guangdong province in China
Pei-Yu Liu et al, Infectious Diseases of Poverty, September 16 2020
paper
Compartmentalized mathematical model to predict future number of active cases and deaths of COVID-19
Osmar Pinto Neto et al, NCBI, August 30 2020
paper
Parameter Estimation of COVID-19 Pandemic Model with Self Protection
Kassahun Getnet Mekonen et al, medRxiv, August 26 2020
paper preprint
A parsimonious model for spatial transmission and heterogeneity in the COVID-19 propagation
Lionel Roques et al, medRxiv, July 18 2020
paper preprint
Development and Validation of a Survival Calculator for Hospitalized Patients with COVID-19
Todd J Levy et al, medRxiv, June 2 2020
paper preprint and app
Significant Relaxation of SARS-CoV-2-Targeted Non-Pharmaceutical Interventions Will Result in Profound Mortality: A New York State Modelling Study
Benjamin U. Hoffman, medRxiv, May 14 2020
paper preprint and GitHub repo
Artificial Intelligence-Empowered Mobilization of Assessments in COVID-19-like Pandemics: A Case Study for Early Flattening of the Curve
Simsek and Kantarci, International Journal of Environmental Research and Public Health, May 14 2020
paper and Cleve's MATLAB simulator link
Exercising caution in correlating COVID-19 incidence and mortality rates with BCG vaccination policies due to variable rates of SARS CoV-2 testing
Janine Hensel et al, medRxiv, April 11 2020
paper preprint
Modeling shield immunity to reduce COVID-19 epidemic spread
Joshua S. Weitz et al, Nature, May 7 2020
paper and MATLAB code
Short-range airborne route dominates exposure of respiratory infection during close contact
Wenzhao Chen et al, ScienceDirect - Building and Environment, June 2020
paper
A matlab code to compute reproduction numbers with applications to the Covid-19 outbreak
Paulo R. Zingano, arXiv, June 23 2020
paper preprint
COVIDiagnosis-Net: Deep Bayes-SqueezeNet based diagnosis of the coronavirus disease 2019 (COVID-19) from X-ray images
Ferhat Ucara and Deniz Korkmaz, Medical Hypotheses
paper
Chaos game representation dataset of SARS-CoV-2 genome
Raquel del M. Barbosa and Marcelo A.C. Fernandes, ScienceDirect, June 2020
paper
Unravelling the Myths of R0 in Controlling the Dynamics of COVID-19 Outbreak: a Modelling Perspective
Mohd and Sulaymana, Chaos Solitons Fractals, May 31 2020
paper
COVID-19 Predictions in Africa using the SIR-Model
smsinks, MATLAB File Exchange, May 31 2020
MATLAB code
A model based study on the dynamics of COVID-19: Prediction and control
Manotosh Mandal et al, Chaos, Solitons & Fractals, May 10 2020
paper
Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens
Estefania Nunez-Bajo et al, bioRxiv, March 25 2020
paper preprint
Rapid community-driven development of a SARS-CoV-2 tissue simulator
Yafei Wang, bioRxiv, April 2 2020
paper preprint
SimCOVID: An Open-Source Simulation Program for the COVID-19 Outbreak
Ismael Abdulrahman, April 2020
paper preprint with MATLAB and Simulink code
The COVID-19 Pandemic: Model-Based Evaluation of Non-Pharmaceutical Interventions and Prognoses
Alex De Visscher, ResearchGate, May 7, 2020
paper preprint
Forecasting the timeframe of coronavirus and human cells interaction with reverse engineering
Ayesha Sohail et al, Progress in Biophysics and Molecular Biology, April 29 2020
paper
Equipos y Máquinas en Establecimientos de Salud
Jorge Mírez, jmirezmedical, May 6 2020
blog
Classification of COVID-19 patients from chest CT images using multi-objective differential evolution–based convolutional neural networks
Dilbag Singh et al, European Journal of Clinical Microbiology & Infectious Diseases, April 7 2020
paper
Predictive Monitoring of COVID-19
SUTD Data-Driven Innovation Lab, May 1 2020
Post with links to code and data
School Opening Delay Effect on Transmission Dynamics of Coronavirus Disease 2019 in Korea: Based on Mathematical Modeling and Simulation Study
Soyoung Kim et al, Journal of Korean Medical Science, April 1, 2020
paper
Within the Lack of COVID-19 Benchmark Dataset: A Novel GAN with Deep Transfer Learning for Corona-virus Detection in Chest X-ray Images
Mohamed Loey et al, preprints.org, April 7 2020
paper preprint
COVID-19: Simulating exponential spread in Simulink
Guy Rouleau, Guy on Simulink, March 23, 2020
blog post with downloadable Simulink model
Understanding COVID-19 Research Articles using Text Analytics in MATLAB
Sohini Sarkar, COVID-19 Open Research Dataset Challenge (CORD-19), April 10, 2020
Kaggle blog post with links to MATLAB code
Why it is Important to Take the Virus Seriously – or Why This Isn't Just Like the Flu
Pascal Wallisch, New York University, blog.pascallisch.net, March 16, 2020
blog post
Corona Detection using AI--Deep Learning Approach Software to Detect Corona in Lung CT scan
Prasad Kalane, Anubhuti Research & Development Center, March 17, 2020
LinkedIn post with links to MATLAB code