Previous Research and Development

COVID-19 Research and Development with MATLAB and Simulink

A SIQ mathematical model on COVID-19 investigating the lockdown effect

Archana Singh Bhaduria, Infectious Disease Modelling, January 7 2021
paper

Studying the effect of lockdown using epidemiological modelling of COVID-19 and a quantum computational approach using the Ising spin interaction

Anshuman Padhi, Nature Scientific Reports, December 10 2020
paper

A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks

Tuan D. Pham, Nature Research, 2020
paper

Brain volumetric changes in the general population following the COVID-19 outbreak and lockdown

Tom Salomon et al, bioRxiv, September 12 2020
paper preprint

Effects of Covid-19 on Crude Oil Price and Future Forecast Using a Model Application and Machine Learning

Azubuike H Amadi et al, European Journal of Engineering Research and Science (EJERS), December 2020
paper

The interplay of movement and spatiotemporal variation in transmission degrades pandemic control

Nicholas Kortessis et al, Proceedings of the National Academy of Sciences, October 5 2020
paper

A dynamical framework for modeling fear of infection and frustration with social distancing in COVID-19 spread

Matthew D. Johnston and Bruce Pell, Mathematical Biosciences and Engineering, August 18 2020
paper

Value of PET/CT and MATLAB in Detection of COVID-19 in an Oncology Patient - Case Report

Michael Masoomi et al, American Journal of Internal Medicine, August 25 2020
paper

Animation of COVID-19 Weekly Cases in England

Duncan Barclay, MATLAB File Exchange, July 2020
MATLAB code

A systematic approach for COVID-19 predictions and parameter estimation

Vishal Srivastava et al, Personal and Ubiquitous Computing, November 6 2020
paper

Analysis of second outbreak of COVID-19 after relaxation of control measures in India

Xinchen Yu et al, Nonlinear Dynamics, October 10 2020
paper

Dynamic graph based epidemiological model for COVID-19 contact tracing data analysis and optimal testing prescription

Shashanka Ubaru et al, arXiv, September 17 2020
paper preprint

Analysis of the fractional corona virus pandemic via deterministic modeling

Nguyen Huy Tuan et al, Mathematical Models in the Applied Sciences, September 6 2020
paper

Group Testing for COVID-19: How to Stop Worrying and Test More

Lakshmi Narasimhan Theagarajan, arXiv, April 15 2020
paper preprint and MATLAB code

Stability analysis of mathematical model new corona virus (COVID-19) disease spread in population

Abderrahim Labzai et al, Communications in Mathematical Biology and Neuroscience, July 14 2020
paper

Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors

Aviv Bergman et al, mSystems, July 14 2020
paper

Modeling and forecasting the spread tendency of the COVID-19 in China

Deshun Sun et al, Advances in Difference Equations, 2020
paper

Time, space and social interactions: exit mechanisms for the Covid-19 epidemics

Antonio Scala et al, Nature, August 13 2020
paper

A cost–benefit analysis of the COVID-19 disease

Rowthorn and Maciejowski, Oxford Review of Economic Policy, August 29 2020
paper

Modeling Reading Ability Gain in Kindergarten Children during COVID-19 School Closures

Xue Bao et al, Internal Journal of Environmental Research and Public Health, September 1 2020
paper

COVID19 Data Fitting with Linear and Nonlinear Regression

Lorand Gabriel Parajdi, MATLAB File Exchange, August 2020
MATLAB code

fitVirusCOVID19

Milan Batista, MATLAB File Exchange, March 2020
MATLAB function

Short-term predictions and prevention strategies for COVID-19: A model-based study

Sk Shahid Nadim et al, arXiv, July 22 2020
paper preprint

Clinical decision support tool and rapid point-of-care platform for determining disease severity in patients with COVID-19

Michael P. McRae et al, Lab on a Chip, June 3 2020
paper

Battling COVID-19 with disinfecting robots

Behind the Headlines, April 23, 2020
blog post

Deep Learning for Medical Imaging: COVID-19 Detection

Barath Narayanan, University of Dayton Research Institute
Deep Learning blog, March 18, 2020
blog post with MATLAB code

An interpretable mortality prediction model for COVID-19 patients - alternative approach

Peter Gemmar, medRxiv, June 22 2020
paper preprint

Social Distancing Monitoring System

Wanbin Song, MATLAB File Exchange, June 10 2020
MATLAB code

Confinement Time Required to Avoid a Quick Rebound of COVID-19: Predictions From a Monte Carlo Stochastic Model

Társilo Girona, Frontiers in Physics, May 8 2020
paper

Antihypertensive drugs in COVID-19 infection

Pinto-Siestsma et al, European Heart Journal, June 5 2020
paper

Modeling and prediction of COVID-19 in Mexico applying mathematical and computational models

Torrealba-Rodriguez O et al, Chaos, Solitons, and Fractals, May 30 2020
paper

Forecast Possible Risk for COVID-19 Epidemic Dissemination Under Current Control Strategies in Japan

Zhongxiang Chen et al, Internal Journal of Environmental Research and Public Health, May 29 2020
paper

Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network

Asmaa Abbas et al, medRxiv, May 18 2020
paper preprint

Using early data to estimate the actual infection fatality ratio from COVID-19 in France

Lionel Roques et al, medRxiv, May 7 2020
paper preprint

Automatic Identification of SARS Coronavirus using Compression-Complexity Measures

Karthi Balasubramanian et al,bioRxiv, March 27 2020
paper preprint and MATLAB code

An SIR model with behavior

John Cochrane, The Grumpy Economist, May 4 2020
blog with MATLAB code

Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

Qun Li, M. Med et al, New England Journal of Medicine (NEJM), March 26, 2020
paper

Data-based analysis, modelling and forecasting of the COVID-19 outbreak

Cleo Anastassopoulou et al, NCBI, March 31, 2020
paper

Modelling the Situation of COVID-19 and Effects of Different Containment Strategies in China with Dynamic Differential Equations and Parameters Estimation

Xiuli Liu et al, Academy of Mathematics and System Science, medRxiv, March 9, 2020
paper preprint

ReCOVER

Ajitesh Srivastava et al, arXiv, April 27 2020
paper preprint and MATLAB code and video

Computer Vision For COVID-19 Control: A Survey

Anwaar Ulhaq et al, arXiv, May 5 2020
paper preprint

Matlab Wrapper for Johns Hopkins University's COVID-19 Data Set

Brian Munsky, GitHub, March 2020
GitHub repo with data, MATLAB code and app

Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2

Yadi Zhou et al, nature.com, March 2, 2020
paper and Github repo with MATLAB code

Healthcare impact of COVID-19 epidemic in India: A stochastic mathematical model

Kaustuv Chatterjee et al, ScienceDirect, April 2 2020
paper

COVID-19 forecasting based on an improved interior search algorithm and multi-layer feed forward neural network

Rizk M. Rizk-Allah et al, arXiv, April 6 2020
paper

Analyzing Novel Corona Virus COVID-19 Dataset

Toshi Takeuchi, Loren on the Art of MATLAB blog, March 16, 2020
blog post with MATLAB code using Kaggle dataset

Coronavirus Projections

Wayne Moss, Cummins Inc.,
March 24, 2020
LinkedIn post with MATLAB code

Threshold condition and non pharmaceutical interventions’s control strategies for elimination of COVID-19

Muhammad Zamir, Results in Physics, January 2021
paper

A deep transfer learning model with classical data augmentation and CGAN to detect COVID-19 from chest CT radiography digital images

Mohamed Loey et al, Special Issue: Bio-Inspired Computing for Deep Learning Applications, October 26 2020
paper

Association of Red Blood Cell Distribution Width With Mortality Risk in Hospitalized Adults With SARS-CoV-2 Infection

Brody H. Foy et al, Critical Care Medicine, September 23 2020
paper

Face masks considerably reduce COVID-19 cases in Germany

Timo Mitze et al, Proceedings of the National Academy of Sciences, December 3 2020
paper

A fractional order approach to modeling and simulations of the novel COVID-19

Isaac Owusu-Mensah et al, Adv Differ Equ, December 3 2020
paper

Example of Steady-State Electric-Current Modeling of a Complicated Cellular Topology with Boundary Element Fast Multipole Method

Vishwanath Iyer et al, Brain and Body Modeling, August 6 2020
paper

The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study

Trystan Leng et al, Wellcome Open Research, September 10 2020
pre-review paper

The average age of a new COVID test (whose results were returned within the last 14 days) is 2.4 days (8/6/20)

u/Johnsmith226, reddit.com, August 2020
social post

Modelling the role of optimal social distancing on disease prevalence of COVID-19 epidemic

Sangeeta Saha & G.P. Samanta, International Journal of Dynamics and Control, November 9 2020
paper

Effects of information-induced behavioural changes during the COVID-19 lockdowns: the case of Italy

Bruno Buonomo and Rosella Della Marca, Royal Society Open Science, September 18 2020
paper

COVIDetectioNet: COVID-19 diagnosis system based on X-ray images using features selected from pre-learned deep features ensemble

Muammer Turkoglu, Applied Intelligence, September 18 2020
paper

The Distributional Effects of Covid-19 and Mitigation Policies

Sewon Hur, SSRN, September 2020
paper

On modeling of coronavirus-19 disease under Mittag-Leffler power law

Samia Bushnaq et al, Advances in Difference Equations, September 11 2020
paper

Applications in Response to COVID-19: Mask Detection

Wanbin Song, Deep Learning, June 11 2020
Blog post and MATLAB code

The end of social confinement and COVID-19 re-emergence risk

Leonardo López and Xavier Rodó, Nature, June 2020
paper

Spatiotemporal transmission dynamics of the COVID-19 pandemic and its impact on critical healthcare capacity

Diego F. Cuadros et al, Health & Place, July 2020
paper

Dynamic modeling and analysis of COVID‐19 in different transmission process and control strategies

Lin Hu and Lin‐Fei Nie, Mathematical Methods in the Applied Sciences, August 29 2020
paper

Herd immunity thresholds for SARS-CoV-2 estimated from unfolding epidemics

Ricardo Aguas et al, medRxiv, August 31 2020
paper preprint and GitHub MATLAB repo

TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection

Xiaoyang Ji et al, bioRxiv, March 2 2020
paper preprint

Non Pharmaceutical Interventions for Optimal Control of COVID-19

Muhmmad Zamir et al, NIH NLM, July 21 2020
paper

social_interaction_network_virus_model

Scott Payne, MATLAB File Exchange, June 24 2020
MATLAB code

COVID 19 Simulator

Nir Gavish, MATLAB File Exchange, June 30 2020
MATLAB app

Differential Effects of Intervention Timing on COVID-19 Spread in the United States

Sen Pei et al, medRxiv, May 20 2020
paper preprint, NYTimes reference, GitHub repo

Individualized System for Augmenting Ventilator Efficacy (iSAVE): A Rapidly deployable system to expand ventilator capacity

Shriya Srinivasan et al, bioRxiv, March 29 2020
paper preprint

Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design

Jacob Kames et al, bioRxiv, March 31 2020
paper preprint

Covid-19: Testing Inequality in New York City

Stephanie Schmitt-Grohé et al, National Bureau of Economic Research, April 2020
working paper

To mask or not to mask: Modeling the potential for face mask use by the general public to curtail the COVID-19 pandemic

Steffen E. Eikenberry et al, medRxiv, April 6 2020
paper preprint

Impact of population mask wearing on Covid-19 post lockdown

Babak and Balaban, Infectious Microbes & Diseases, June 5 2020
paper

STeCC: Smart Testing with Contact Counting Enhances Covid-19 Mitigation by Bluetooth 2 App Based Contact Tracing

Hossein Gorji et al, medRxiv, May 7 2020
paper preprint

Assessing the Risks of Spatial Spread of the New Coronavirus COVID-19

Jiang X et al, Journal of Bacteriology and Mycology, June 4 2020
paper

Insights into the dynamics and control of COVID-19 infection rates

Mark J. Willis et al, PubMed Central, May 28 2020
paper

IKONOS: An intelligent tool to support diagnosis of Covid-19 by texture analysis of x-ray images

Juliana Carneiro Gomes et al, medRxiv, May 9 2020
paper preprint and GitHub repo

Rare and extreme events: the case of COVID-19 pandemic

Machado & Lopez, Nonlinear Dynamics, May 16 2020
paper

Applying chemical reaction transition theory to predict the latent transmission dynamics of coronavirus outbreak in China

Peng Xu, medRxiv, February 25, 2020
paper preprint

COVID-19: Predictive Mathematical Models for the Number of Deaths in South Korea, Italy, Spain, France, UK, Germany, and USA

Athanasios S. Fokas et al, ScienceAdvances, May 12 2020
paper preprint

Dynamic causal modelling of COVID-19

Karl J Friston et al, arXiv, April 9 2020
paper preprint and MATLAB SPM tools

The Outbreak’s Modeling of Coronavirus (COVID-19) Using the Modified SEIR Model in Indonesia

Rustan Rustan et al, Spektra, April 1 2020
paper

A multi-region discrete time mathematical modeling of the dynamics of Covid-19 virus propagation using optimal control

Bouchaib Khajji et al, Journal of Applied Mathematics and Computing, March 1 2020
paper

The Reconstruction and Prediction Algorithm of the Fractional TDD for the Local Outbreak of COVID-19

Yu Chen et al, arxiv.org, February 24, 2020
paper preprint

Harmony-Search and Otsu based System for Coronavirus Disease (COVID-19) Detection using Lung CT Scan Images

V. Rajinikanth et al, April 6 2020
paper preprint

UK Coronavirus Modelling – match to data

Brian Sutton, April 18 2020
blog post

Fighting COVID-19 with computational approaches to repurposing existing drugs

Behind the Headlines, April 23 2020
blog post

Deep Learning Analysis of COVID-19 lung X-Rays using MATLAB

FlyLogical, blogspot.com, April 8, 2020
blog post with MATLAB code

In-host Modelling of COVID-19 Kinetics in Humans

Esteban A. Hernandez-Vargas et al, medRxiv, April 15 2020
paper preprint

TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection

Xiayong, Ji, bioRxiv.org, March 2, 2020
paper preprint

Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens

Estefania Nunez-Bajo et al, bioRxiv.org, March 23, 2020
paper preprint

COVID-19 Findings, Simulations

Ruiyun Li et al, GitHub, March 2020
GitHub repo with MATLAB code, Shaman Group at Columbia University

A Mathematical Model of Coronavirus Disease (COVID-19) Containing Asymptomatic and Symptomatic Classes

Idris Ahmed et al, Results Phys, January 6 2021
paper

Empirical model for short-time prediction of COVID-19 spreading

Marti Catala et al, PLOS Computational Biology, December 9 2020
paper

Modeling lung perfusion abnormalities to explain early COVID-19 hypoxemia

Jacob Herrmann et al, Nature Communications, September 28 2020
paper

Patient Flow Dynamics in Hospital Systems During Times of COVID-19: Cox Proportional Hazard Regression Analysis

Sudhir Bhandari et al, Frontiers in Public Health, December 8 2020
paper

Modeling Growth, Containment and Decay of the COVID-19 Epidemic in Italy

Francesco Capuano, Frontiers in Physics, November 30 2020
paper

How long should the COVID-19 lockdown continue?

Jonathan Caulkins et al, PLOS ONE, December 2 2020
paper

A network model of Italy shows that intermittent regional strategies can alleviate the COVID-19 epidemic

Fabio Della Rossa et al, Nature Communications, October 9 2020
paper

The COVID-19 Pandemic in Africa: Predictions using the SIR Model

Musalula Sinkala, medRxiv, June 1 2020
paper preprint and MATLAB code

Topological epidemic model: Theoretical insight into underlying networks

Yoshito Hirata, Chaos: An Interdisciplinary Journal of Nonlinear Science, October 27 2020
paper, MATLAB code

Epidemic Characteristics of COVID-19 in Africa

Lijun Wang et al, Social Physics, September 29 2020
paper

A data driven analysis and forecast of an SEIARD epidemic model for COVID-19 in Mexico

Ugo Avila-Ponce de Leo'n et al, Big Data and Information Analytics, September 23 2020
paper

Haar wavelet collocation approach for the solution of fractional order COVID-19 model using Caputo derivative

Kamal Shah et al, Alexandria Engineering Journal, September 14 2020
paper

Avoiding COVID-19: Aerosol Guidelines

Matthew Evans, medRxiv, June 5 2020
paper preprint

LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

Jonathan L. Schmid-Burgk et al, bioRxiv, June 8 2020
paper preprint and MATLAB code

SEIRS-based COVID-19 Simulation Package

Mark Kok Yew Ng, COVIDSIM
GitHub MATLAB repo

The effect of control measures on COVID-19 transmission in Italy: Comparison with Guangdong province in China

Pei-Yu Liu et al, Infectious Diseases of Poverty, September 16 2020
paper

Compartmentalized mathematical model to predict future number of active cases and deaths of COVID-19

Osmar Pinto Neto et al, NCBI, August 30 2020
paper

Parameter Estimation of COVID-19 Pandemic Model with Self Protection

Kassahun Getnet Mekonen et al, medRxiv, August 26 2020
paper preprint

A parsimonious model for spatial transmission and heterogeneity in the COVID-19 propagation

Lionel Roques et al, medRxiv, July 18 2020
paper preprint

Development and Validation of a Survival Calculator for Hospitalized Patients with COVID-19

Todd J Levy et al, medRxiv, June 2 2020
paper preprint and app

Significant Relaxation of SARS-CoV-2-Targeted Non-Pharmaceutical Interventions Will Result in Profound Mortality: A New York State Modelling Study

Benjamin U. Hoffman, medRxiv, May 14 2020
paper preprint and GitHub repo

Artificial Intelligence-Empowered Mobilization of Assessments in COVID-19-like Pandemics: A Case Study for Early Flattening of the Curve

Simsek and Kantarci, International Journal of Environmental Research and Public Health, May 14 2020
paper and Cleve's MATLAB simulator link

Exercising caution in correlating COVID-19 incidence and mortality rates with BCG vaccination policies due to variable rates of SARS CoV-2 testing

Janine Hensel et al, medRxiv, April 11 2020
paper preprint

Modeling shield immunity to reduce COVID-19 epidemic spread

Joshua S. Weitz et al, Nature, May 7 2020
paper and MATLAB code

Short-range airborne route dominates exposure of respiratory infection during close contact

Wenzhao Chen et al, ScienceDirect - Building and Environment, June 2020
paper

A matlab code to compute reproduction numbers with applications to the Covid-19 outbreak

Paulo R. Zingano, arXiv, June 23 2020
paper preprint

COVIDiagnosis-Net: Deep Bayes-SqueezeNet based diagnosis of the coronavirus disease 2019 (COVID-19) from X-ray images

Ferhat Ucara and Deniz Korkmaz, Medical Hypotheses
paper

Chaos game representation dataset of SARS-CoV-2 genome

Raquel del M. Barbosa and Marcelo A.C. Fernandes, ScienceDirect, June 2020
paper

Unravelling the Myths of R0 in Controlling the Dynamics of COVID-19 Outbreak: a Modelling Perspective

Mohd and Sulaymana, Chaos Solitons Fractals, May 31 2020
paper

COVID-19 Predictions in Africa using the SIR-Model

smsinks, MATLAB File Exchange, May 31 2020
MATLAB code

A model based study on the dynamics of COVID-19: Prediction and control

Manotosh Mandal et al, Chaos, Solitons & Fractals, May 10 2020
paper

Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens

Estefania Nunez-Bajo et al, bioRxiv, March 25 2020
paper preprint

Rapid community-driven development of a SARS-CoV-2 tissue simulator

Yafei Wang, bioRxiv, April 2 2020
paper preprint

SimCOVID: An Open-Source Simulation Program for the COVID-19 Outbreak

Ismael Abdulrahman, April 2020
paper preprint with MATLAB and Simulink code

The COVID-19 Pandemic: Model-Based Evaluation of Non-Pharmaceutical Interventions and Prognoses

Alex De Visscher, ResearchGate, May 7, 2020
paper preprint

Forecasting the timeframe of coronavirus and human cells interaction with reverse engineering

Ayesha Sohail et al, Progress in Biophysics and Molecular Biology, April 29 2020
paper

Equipos y Máquinas en Establecimientos de Salud

Jorge Mírez, jmirezmedical, May 6 2020
blog

Classification of COVID-19 patients from chest CT images using multi-objective differential evolution–based convolutional neural networks

Dilbag Singh et al, European Journal of Clinical Microbiology & Infectious Diseases, April 7 2020
paper

Predictive Monitoring of COVID-19

SUTD Data-Driven Innovation Lab, May 1 2020
Post with links to code and data

School Opening Delay Effect on Transmission Dynamics of Coronavirus Disease 2019 in Korea: Based on Mathematical Modeling and Simulation Study

Soyoung Kim et al, Journal of Korean Medical Science, April 1, 2020
paper

Within the Lack of COVID-19 Benchmark Dataset: A Novel GAN with Deep Transfer Learning for Corona-virus Detection in Chest X-ray Images

Mohamed Loey et al, preprints.org, April 7 2020
paper preprint

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